Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

2GYI

DESIGN, SYNTHESIS, AND CHARACTERIZATION OF A POTENT XYLOSE ISOMERASE INHIBITOR, D-THREONOHYDROXAMIC ACID, AND HIGH-RESOLUTION X-RAY CRYSTALLOGRAPHIC STRUCTURE OF THE ENZYME-INHIBITOR COMPLEX

Replaces:  1GYI
Functional Information from GO Data
ChainGOidnamespacecontents
A0000287molecular_functionmagnesium ion binding
A0005737cellular_componentcytoplasm
A0005975biological_processcarbohydrate metabolic process
A0009045molecular_functionxylose isomerase activity
A0016853molecular_functionisomerase activity
A0042732biological_processD-xylose metabolic process
A0046872molecular_functionmetal ion binding
B0000287molecular_functionmagnesium ion binding
B0005737cellular_componentcytoplasm
B0005975biological_processcarbohydrate metabolic process
B0009045molecular_functionxylose isomerase activity
B0016853molecular_functionisomerase activity
B0042732biological_processD-xylose metabolic process
B0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG A 400
ChainResidue
AGLU180
AGLU216
AASP244
AASP286
AHYA960

site_idAC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG A 401
ChainResidue
AGLU216
AHIS219
AASP256
AHYA960
AHOH1700
AHOH1701

site_idAC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG B 400
ChainResidue
BGLU180
BGLU216
BASP244
BASP286
BMG401
BHYA970

site_idAC4
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG B 401
ChainResidue
BGLU216
BHIS219
BMG400
BHYA970
BHOH1800
BHOH1801

site_idAC5
Number of Residues17
DetailsBINDING SITE FOR RESIDUE HYA A 960
ChainResidue
ATRP15
AHIS53
APHE93
ATRP136
AGLU180
ALYS182
AGLU216
AHIS219
AASP244
AASP286
AMG400
AMG401
AHOH1166
AHOH1170
AHOH1338
AHOH1700
BPHE25

site_idAC6
Number of Residues16
DetailsBINDING SITE FOR RESIDUE HYA B 970
ChainResidue
APHE25
BTRP15
BHIS53
BPHE93
BTRP136
BGLU180
BLYS182
BHIS219
BASP244
BASP286
BMG400
BMG401
BHOH1279
BHOH1281
BHOH1539
BHOH1800

site_idHYA
Number of Residues3
DetailsINHIBITOR, D-THREONOHYDROXAMIC ACID BINDING SITE IN MONOMER A
ChainResidue
AHYA960
ALYS182
AHIS53

site_idHYB
Number of Residues3
DetailsINHIBITOR, D-THREONOHYDROXAMIC ACID BINDING SITE IN MONOMER B
ChainResidue
BHYA970
BLYS182
BHIS53

site_idM1A
Number of Residues6
DetailsMETAL BINDING SITE 1 IN MONOMER A ACTIVE SITE
ChainResidue
AMG400
AGLU180
AASP244
AASP286
AGLU216
AHYA960

site_idM1B
Number of Residues6
DetailsMETAL BINDING SITE 1 IN MONOMER B ACTIVE SITE
ChainResidue
BMG400
BGLU180
BASP244
BASP286
BGLU216
BHYA970

site_idM2A
Number of Residues6
DetailsMETAL BINDING SITE 2 IN MONOMER A ACTIVE SITE
ChainResidue
AHYA960
AHOH1700
AHOH1701
AMG401
AGLU216
AHIS219

site_idM2B
Number of Residues6
DetailsMETAL BINDING SITE 2 IN MONOMER B ACTIVE SITE
ChainResidue
BMG401
BGLU216
BHIS219
BHYA970
BHOH1800
BHOH1801

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsACT_SITE: ACT_SITE => ECO:0000250
ChainResidueDetails
AASP54
ALEU57
BASP54
BLEU57

site_idSWS_FT_FI2
Number of Residues14
DetailsBINDING:
ChainResidueDetails
APRO181
BGLU220
BLEU245
BGLN255
BLEU257
BPHE287
AVAL217
AGLU220
ALEU245
AGLN255
ALEU257
APHE287
BPRO181
BVAL217

Catalytic Information from CSA
site_idCSA1
Number of Residues3
DetailsAnnotated By Reference To The Literature 1de6
ChainResidueDetails
AASP254
ALYS182
AHIS219

site_idCSA2
Number of Residues3
DetailsAnnotated By Reference To The Literature 1de6
ChainResidueDetails
BASP254
BLYS182
BHIS219

site_idCSA3
Number of Residues1
DetailsAnnotated By Reference To The Literature 1de6
ChainResidueDetails
AARG291

site_idCSA4
Number of Residues1
DetailsAnnotated By Reference To The Literature 1de6
ChainResidueDetails
BARG291

site_idCSA5
Number of Residues4
DetailsAnnotated By Reference To The Literature 1de6
ChainResidueDetails
AGLU180
ALYS182
AASP56
AHIS53

site_idCSA6
Number of Residues4
DetailsAnnotated By Reference To The Literature 1de6
ChainResidueDetails
BGLU180
BLYS182
BASP56
BHIS53

221716

PDB entries from 2024-06-26

PDB statisticsPDBj update infoContact PDBjnumon