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Summary Structural details Experimental details Functional details Sequence Neighbor History Downloads

2GX5

N-terminal GAF domain of transcriptional pleiotropic repressor CodY

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0003677	molecular_function	DNA binding
A	0003700	molecular_function	DNA-binding transcription factor activity
A	0005525	molecular_function	GTP binding
A	0045892	biological_process	negative regulation of DNA-templated transcription
B	0003677	molecular_function	DNA binding
B	0003700	molecular_function	DNA-binding transcription factor activity
B	0005525	molecular_function	GTP binding
B	0045892	biological_process	negative regulation of DNA-templated transcription
C	0003677	molecular_function	DNA binding
C	0003700	molecular_function	DNA-binding transcription factor activity
C	0005525	molecular_function	GTP binding
C	0045892	biological_process	negative regulation of DNA-templated transcription
D	0003677	molecular_function	DNA binding
D	0003700	molecular_function	DNA-binding transcription factor activity
D	0005525	molecular_function	GTP binding
D	0045892	biological_process	negative regulation of DNA-templated transcription

Functional Information from PDB Data

site_id	AC1
Number of Residues	4
Details	BINDING SITE FOR RESIDUE SO4 C 501

Chain	Residue
C	SER43
C	ARG45
C	LYS47
C	HOH618

site_id	AC2
Number of Residues	5
Details	BINDING SITE FOR RESIDUE SO4 D 502

Chain	Residue
A	PHE80
A	GLY120
A	ARG122
D	SER12
D	THR30

site_id	AC3
Number of Residues	4
Details	BINDING SITE FOR RESIDUE SO4 B 504

Chain	Residue
B	SER43
B	ARG45
B	LYS47
B	HOH592

site_id	AC4
Number of Residues	5
Details	BINDING SITE FOR RESIDUE SO4 D 505

Chain	Residue
D	ASP68
D	GLN70
D	PHE71
D	PRO72
D	HOH534

site_id	AC5
Number of Residues	8
Details	BINDING SITE FOR RESIDUE SO4 D 506

Chain	Residue
D	SER43
D	ARG45
D	LYS47
D	LYS158
D	HOH541
D	HOH616
D	HOH630
D	HOH631

site_id	AC6
Number of Residues	6
Details	BINDING SITE FOR RESIDUE SO4 A 509

Chain	Residue
A	SER43
A	ARG45
A	LYS47
A	HOH551
A	HOH553
A	HOH614

site_id	AC7
Number of Residues	7
Details	BINDING SITE FOR RESIDUE SO4 B 510

Chain	Residue
B	ALA17
B	PRO21
B	VAL22
B	ASN23
B	GLU26
B	MET27
B	GLU153

site_id	AC8
Number of Residues	2
Details	BINDING SITE FOR RESIDUE SO4 C 511

Chain	Residue
B	ARG69
C	HOH598

site_id	AC9
Number of Residues	5
Details	BINDING SITE FOR RESIDUE PG4 C 512

Chain	Residue
C	GLY109
C	GLN132
D	ASP60
D	ASP104
D	GOL519

site_id	BC1
Number of Residues	4
Details	BINDING SITE FOR RESIDUE P6G C 513

Chain	Residue
C	ARG61
C	LYS64
C	ASP104
D	HOH618

site_id	BC2
Number of Residues	4
Details	BINDING SITE FOR RESIDUE PCG C 514

Chain	Residue
C	LYS25
C	GLY50
C	TYR51
C	ARG69

site_id	BC3
Number of Residues	4
Details	BINDING SITE FOR RESIDUE PGE A 515

Chain	Residue
A	ASP90
A	LEU110
A	LEU131
A	GLN132

site_id	BC4
Number of Residues	6
Details	BINDING SITE FOR RESIDUE GOL D 516

Chain	Residue
D	LYS20
D	PRO21
D	ASN23
D	GLU26
D	MET27
D	GLU153

site_id	BC5
Number of Residues	6
Details	BINDING SITE FOR RESIDUE GOL C 517

Chain	Residue
C	ILE53
C	GLN56
C	ILE57
C	ASN59
C	MET62
C	HOH558

site_id	BC6
Number of Residues	9
Details	BINDING SITE FOR RESIDUE GOL C 518

Chain	Residue
C	PRO115
C	ILE116
C	ILE117
C	GLU144
C	ALA147
C	THR148
C	HOH619
D	ASN11
D	GLN15

site_id	BC7
Number of Residues	4
Details	BINDING SITE FOR RESIDUE GOL D 519

Chain	Residue
C	PG4512
D	ARG61
D	LYS64
D	HOH565

site_id	BC8
Number of Residues	8
Details	BINDING SITE FOR RESIDUE GOL A 520

Chain	Residue
A	MET13
A	ALA16
A	LYS20
A	PRO21
A	VAL22
A	ASN23
A	MET27
A	GLU153

site_id	BC9
Number of Residues	4
Details	BINDING SITE FOR RESIDUE GOL D 521

Chain	Residue
D	ILE53
D	GLN56
D	ILE57
D	HOH588

site_id	CC1
Number of Residues	5
Details	BINDING SITE FOR RESIDUE GOL D 522

Chain	Residue
D	HOH547
D	VAL22
D	ASN23
D	PHE24
D	LYS25

site_id	CC2
Number of Residues	5
Details	BINDING SITE FOR RESIDUE GOL B 523

Chain	Residue
B	ILE53
B	GLN56
B	ILE57
B	LEU66
B	HOH556

site_id	CC3
Number of Residues	9
Details	BINDING SITE FOR RESIDUE GOL D 524

Chain	Residue
A	ILE9
A	SER12
A	MET13
A	ALA16
A	GLU26
A	THR30
D	GLU121
D	ARG122
D	HOH555

site_id	CC4
Number of Residues	5
Details	BINDING SITE FOR RESIDUE GOL A 525

Chain	Residue
A	GLN56
A	ILE57
A	ASN59
A	LYS63
A	HOH588

site_id	CC5
Number of Residues	5
Details	BINDING SITE FOR RESIDUE GOL C 526

Chain	Residue
B	ARG122
C	SER12
C	MET13
C	GLU26
C	THR30

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	8
Details	Binding site: {"evidences":[{"source":"PubMed","id":"16488888","evidenceCode":"ECO:0000305"},{"source":"PDB","id":"2GX5","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

site_id	SWS_FT_FI2
Number of Residues	12
Details	Binding site: {"evidences":[{"source":"PubMed","id":"16488888","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"2HGV","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

site_id	SWS_FT_FI3
Number of Residues	2
Details	Binding site: {"evidences":[{"source":"PubMed","id":"28011634","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"5LOE","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

site_id	SWS_FT_FI4
Number of Residues	153
Details	Region: {"description":"GAF domain","evidences":[{"source":"PubMed","id":"16488888","evidenceCode":"ECO:0000305"}]}

Chain

Residue

Details

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PDB entries from 2025-12-03

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