2GSM
Catalytic Core (Subunits I and II) of Cytochrome c oxidase from Rhodobacter sphaeroides
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0004129 | molecular_function | cytochrome-c oxidase activity |
A | 0005515 | molecular_function | protein binding |
A | 0005886 | cellular_component | plasma membrane |
A | 0006119 | biological_process | oxidative phosphorylation |
A | 0009060 | biological_process | aerobic respiration |
A | 0015990 | biological_process | electron transport coupled proton transport |
A | 0016020 | cellular_component | membrane |
A | 0020037 | molecular_function | heme binding |
A | 0045277 | cellular_component | respiratory chain complex IV |
A | 0046872 | molecular_function | metal ion binding |
A | 0070469 | cellular_component | respirasome |
A | 1902600 | biological_process | proton transmembrane transport |
B | 0004129 | molecular_function | cytochrome-c oxidase activity |
B | 0005507 | molecular_function | copper ion binding |
B | 0005515 | molecular_function | protein binding |
B | 0005886 | cellular_component | plasma membrane |
B | 0016020 | cellular_component | membrane |
B | 0016491 | molecular_function | oxidoreductase activity |
B | 0022900 | biological_process | electron transport chain |
B | 0042773 | biological_process | ATP synthesis coupled electron transport |
B | 0046872 | molecular_function | metal ion binding |
B | 0070469 | cellular_component | respirasome |
B | 1902600 | biological_process | proton transmembrane transport |
C | 0004129 | molecular_function | cytochrome-c oxidase activity |
C | 0005515 | molecular_function | protein binding |
C | 0005886 | cellular_component | plasma membrane |
C | 0006119 | biological_process | oxidative phosphorylation |
C | 0009060 | biological_process | aerobic respiration |
C | 0015990 | biological_process | electron transport coupled proton transport |
C | 0016020 | cellular_component | membrane |
C | 0020037 | molecular_function | heme binding |
C | 0045277 | cellular_component | respiratory chain complex IV |
C | 0046872 | molecular_function | metal ion binding |
C | 0070469 | cellular_component | respirasome |
C | 1902600 | biological_process | proton transmembrane transport |
D | 0004129 | molecular_function | cytochrome-c oxidase activity |
D | 0005507 | molecular_function | copper ion binding |
D | 0005515 | molecular_function | protein binding |
D | 0005886 | cellular_component | plasma membrane |
D | 0016020 | cellular_component | membrane |
D | 0016491 | molecular_function | oxidoreductase activity |
D | 0022900 | biological_process | electron transport chain |
D | 0042773 | biological_process | ATP synthesis coupled electron transport |
D | 0046872 | molecular_function | metal ion binding |
D | 0070469 | cellular_component | respirasome |
D | 1902600 | biological_process | proton transmembrane transport |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 11 |
Details | BINDING SITE FOR RESIDUE DMU A 5001 |
Chain | Residue |
A | TRP451 |
B | HOH5040 |
B | HOH5125 |
A | PHE510 |
A | TYR517 |
A | DMU5002 |
B | GLN142 |
B | TRP143 |
B | PRO164 |
B | HOH5017 |
B | HOH5033 |
site_id | AC2 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE DMU A 5002 |
Chain | Residue |
A | TRP451 |
A | ALA506 |
A | DMU5001 |
A | HOH6627 |
site_id | AC3 |
Number of Residues | 12 |
Details | BINDING SITE FOR RESIDUE DMU B 5003 |
Chain | Residue |
A | TRP371 |
B | PHE94 |
B | HIS96 |
B | ASN97 |
B | LEU100 |
B | TRP104 |
B | HOH5144 |
C | GLU86 |
D | SER173 |
D | PRO174 |
D | GLU177 |
D | HOH1151 |
site_id | AC4 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE DMU A 5004 |
Chain | Residue |
A | MET443 |
A | SER444 |
A | HOH6557 |
site_id | AC5 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE DMU B 5011 |
Chain | Residue |
B | PHE124 |
B | GLU128 |
B | HOH5146 |
site_id | AC6 |
Number of Residues | 2 |
Details | BINDING SITE FOR RESIDUE DMU C 6002 |
Chain | Residue |
C | TRP451 |
C | TRD6001 |
site_id | AC7 |
Number of Residues | 2 |
Details | BINDING SITE FOR RESIDUE DMU D 6003 |
Chain | Residue |
D | HIS96 |
D | ASN97 |
site_id | AC8 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE DMU C 6004 |
Chain | Residue |
C | TRP20 |
C | MET443 |
C | SER444 |
C | ILE515 |
C | HOH1102 |
site_id | AC9 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE DMU C 6005 |
Chain | Residue |
C | GLN61 |
C | PHE62 |
C | PRO82 |
C | HOH1152 |
C | HOH1164 |
site_id | BC1 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE DMU D 6011 |
Chain | Residue |
D | PRO121 |
D | PHE124 |
D | ASN125 |
D | GLU128 |
site_id | BC2 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE CU B 3003 |
Chain | Residue |
B | CYS252 |
B | GLU254 |
B | CYS256 |
B | HIS260 |
B | CU3004 |
site_id | BC3 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE CU B 3004 |
Chain | Residue |
B | HIS217 |
B | CYS252 |
B | CYS256 |
B | MET263 |
B | CU3003 |
site_id | BC4 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE CU A 3005 |
Chain | Residue |
A | HIS284 |
A | HIS333 |
A | HIS334 |
A | OH6501 |
A | HOH6506 |
site_id | BC5 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE MG A 3006 |
Chain | Residue |
A | HIS411 |
A | ASP412 |
B | GLU254 |
B | HOH5042 |
B | HOH5048 |
B | HOH5055 |
site_id | BC6 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE CA A 3007 |
Chain | Residue |
A | GLU54 |
A | ALA57 |
A | GLY59 |
A | GLN61 |
A | HOH6547 |
A | HOH6559 |
site_id | BC7 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE CD B 3008 |
Chain | Residue |
B | GLU280 |
B | HIS283 |
B | HIS285 |
D | GLU152 |
site_id | BC8 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE CD B 3009 |
Chain | Residue |
B | HIS96 |
B | GLU101 |
B | HOH5113 |
B | HOH5114 |
site_id | BC9 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE CU D 4003 |
Chain | Residue |
D | CYS252 |
D | GLU254 |
D | CYS256 |
D | HIS260 |
D | CU4004 |
site_id | CC1 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE CU D 4004 |
Chain | Residue |
D | HIS217 |
D | CYS252 |
D | CYS256 |
D | MET263 |
D | CU4003 |
site_id | CC2 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE CU C 4005 |
Chain | Residue |
C | HOH1006 |
C | OH7501 |
C | HIS284 |
C | HIS333 |
C | HIS334 |
site_id | CC3 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE MG C 4006 |
Chain | Residue |
C | HIS411 |
C | ASP412 |
D | GLU254 |
D | HOH1071 |
D | HOH1082 |
D | HOH1094 |
site_id | CC4 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE CA C 4007 |
Chain | Residue |
C | GLU54 |
C | ALA57 |
C | GLY59 |
C | GLN61 |
C | HOH1085 |
C | HOH1107 |
site_id | CC5 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE CD D 4008 |
Chain | Residue |
B | GLU152 |
D | GLU280 |
D | HIS283 |
D | HIS285 |
site_id | CC6 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE CD D 4009 |
Chain | Residue |
D | HIS96 |
D | GLU101 |
D | HOH1196 |
D | HOH1197 |
site_id | CC7 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE OH A 6501 |
Chain | Residue |
A | HIS284 |
A | VAL287 |
A | HIS334 |
A | HEA2002 |
A | CU3005 |
A | HOH6506 |
site_id | CC8 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE OH C 7501 |
Chain | Residue |
C | HIS284 |
C | VAL287 |
C | HIS334 |
C | HOH1006 |
C | HEA3002 |
C | CU4005 |
site_id | CC9 |
Number of Residues | 23 |
Details | BINDING SITE FOR RESIDUE HEA A 2001 |
Chain | Residue |
A | LEU34 |
A | GLY38 |
A | THR48 |
A | MET51 |
A | ARG52 |
A | TRP95 |
A | ILE99 |
A | HIS102 |
A | MET106 |
A | GLY171 |
A | TRP172 |
A | TYR414 |
A | PHE420 |
A | HIS421 |
A | SER425 |
A | PHE468 |
A | GLN471 |
A | ARG481 |
A | ARG482 |
A | SER504 |
A | HOH6502 |
A | HOH6504 |
A | HOH6569 |
site_id | DC1 |
Number of Residues | 30 |
Details | BINDING SITE FOR RESIDUE HEA A 2002 |
Chain | Residue |
A | TRP172 |
A | TRP280 |
A | VAL287 |
A | TYR288 |
A | HIS333 |
A | HIS334 |
A | THR352 |
A | ILE355 |
A | THR359 |
A | GLY360 |
A | ILE363 |
A | GLY395 |
A | GLY398 |
A | ILE399 |
A | LEU401 |
A | SER402 |
A | ASP407 |
A | HIS411 |
A | VAL416 |
A | HIS419 |
A | PHE420 |
A | VAL423 |
A | MET424 |
A | ARG481 |
A | OH6501 |
A | HOH6506 |
A | HOH6515 |
A | HOH6524 |
A | HOH6533 |
A | HOH6553 |
site_id | DC2 |
Number of Residues | 27 |
Details | BINDING SITE FOR RESIDUE HEA C 3001 |
Chain | Residue |
C | LEU34 |
C | THR48 |
C | MET51 |
C | ARG52 |
C | TRP95 |
C | ILE99 |
C | HIS102 |
C | MET106 |
C | MET107 |
C | VAL111 |
C | GLY171 |
C | TRP172 |
C | TYR414 |
C | PHE420 |
C | HIS421 |
C | MET424 |
C | SER425 |
C | VAL429 |
C | PHE468 |
C | GLN471 |
C | ARG481 |
C | ARG482 |
C | SER504 |
C | PHE508 |
C | HOH1001 |
C | HOH1003 |
C | HOH1130 |
site_id | DC3 |
Number of Residues | 28 |
Details | BINDING SITE FOR RESIDUE HEA C 3002 |
Chain | Residue |
C | TRP172 |
C | TRP280 |
C | VAL287 |
C | TYR288 |
C | HIS333 |
C | HIS334 |
C | THR352 |
C | ILE355 |
C | THR359 |
C | GLY360 |
C | GLY395 |
C | GLY398 |
C | LEU401 |
C | SER402 |
C | ASP407 |
C | HIS411 |
C | VAL416 |
C | HIS419 |
C | PHE420 |
C | VAL423 |
C | MET424 |
C | ARG481 |
C | HOH1006 |
C | HOH1015 |
C | HOH1030 |
C | HOH1048 |
C | HOH1096 |
C | OH7501 |
site_id | DC4 |
Number of Residues | 2 |
Details | BINDING SITE FOR RESIDUE TRD A 5005 |
Chain | Residue |
A | MET56 |
A | HOH6585 |
site_id | DC5 |
Number of Residues | 1 |
Details | BINDING SITE FOR RESIDUE TRD A 5006 |
Chain | Residue |
A | TRP81 |
site_id | DC6 |
Number of Residues | 2 |
Details | BINDING SITE FOR RESIDUE TRD A 5007 |
Chain | Residue |
A | ARG476 |
B | THR41 |
site_id | DC7 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE TRD B 5008 |
Chain | Residue |
A | MET350 |
A | VAL354 |
B | GLY116 |
site_id | DC8 |
Number of Residues | 1 |
Details | BINDING SITE FOR RESIDUE TRD A 5010 |
Chain | Residue |
B | HIS84 |
site_id | DC9 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE TRD C 6001 |
Chain | Residue |
C | TRP451 |
C | GLY513 |
C | DMU6002 |
site_id | EC1 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE TRD C 6006 |
Chain | Residue |
C | LEU80 |
C | TRP81 |
C | PRO82 |
site_id | EC2 |
Number of Residues | 2 |
Details | BINDING SITE FOR RESIDUE TRD D 6007 |
Chain | Residue |
C | ARG476 |
D | THR41 |
Functional Information from PROSITE/UniProt
site_id | PS00078 |
Number of Residues | 49 |
Details | COX2 CO II and nitrous oxide reductase dinuclear copper centers signature. ViHswtvpafgvkqdavpgrlaqlwfraeregiffgq......CselCgisHayM |
Chain | Residue | Details |
B | VAL215-MET263 |
site_id | PS00077 |
Number of Residues | 55 |
Details | COX1_CUB Heme-copper oxidase catalytic subunit, copper B binding region signature. WFFGHPeVyiivlpafgivshviatfakkpifgylpmvyamvaigvlgfvvwa..HH |
Chain | Residue | Details |
A | TRP280-HIS334 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 80 |
Details | TRANSMEM: Helical => ECO:0000255 |
Chain | Residue | Details |
B | PHE60-VAL80 | |
A | PHE420-ILE440 | |
A | LEU455-GLY475 | |
A | LEU499-LEU519 | |
C | ILE29-VAL49 | |
C | VAL97-GLY117 | |
C | LEU141-GLY161 | |
C | LEU189-ILE209 | |
C | LEU227-ALA247 | |
C | ILE278-VAL298 | |
C | ILE310-VAL330 | |
B | TRP104-PHE124 | |
C | PHE348-ALA368 | |
C | MET381-LEU401 | |
C | PHE420-ILE440 | |
C | LEU455-GLY475 | |
C | LEU499-LEU519 | |
D | PHE60-VAL80 | |
D | TRP104-PHE124 | |
A | LEU227-ALA247 | |
A | ILE278-VAL298 | |
A | ILE310-VAL330 | |
A | PHE348-ALA368 | |
A | MET381-LEU401 |
site_id | SWS_FT_FI2 |
Number of Residues | 8 |
Details | BINDING: BINDING => ECO:0000305 |
Chain | Residue | Details |
B | HIS217 | |
B | CYS252 | |
B | CYS256 | |
B | HIS260 | |
D | HIS217 | |
D | CYS252 | |
D | CYS256 | |
D | HIS260 |
site_id | SWS_FT_FI3 |
Number of Residues | 8 |
Details | BINDING: BINDING => ECO:0000305 |
Chain | Residue | Details |
A | HIS284 | |
A | TYR288 | |
A | HIS333 | |
A | HIS334 | |
C | HIS284 | |
C | TYR288 | |
C | HIS333 | |
C | HIS334 |
site_id | SWS_FT_FI4 |
Number of Residues | 4 |
Details | CROSSLNK: 1'-histidyl-3'-tyrosine (His-Tyr) => ECO:0000250 |
Chain | Residue | Details |
A | HIS284 | |
A | TYR288 | |
C | HIS284 | |
C | TYR288 |
Catalytic Information from CSA
site_id | CSA1 |
Number of Residues | 7 |
Details | Annotated By Reference To The Literature 1ar1 |
Chain | Residue | Details |
A | HIS419 | |
A | HIS421 | |
A | ARG482 | |
A | ARG481 | |
A | PHE420 | |
A | TYR288 | |
A | HIS284 |
site_id | CSA2 |
Number of Residues | 7 |
Details | Annotated By Reference To The Literature 1ar1 |
Chain | Residue | Details |
C | HIS419 | |
C | HIS421 | |
C | ARG482 | |
C | ARG481 | |
C | PHE420 | |
C | TYR288 | |
C | HIS284 |
site_id | CSA3 |
Number of Residues | 2 |
Details | Annotated By Reference To The Literature 1ar1 |
Chain | Residue | Details |
A | GLU286 | |
A | LYS362 |
site_id | CSA4 |
Number of Residues | 2 |
Details | Annotated By Reference To The Literature 1ar1 |
Chain | Residue | Details |
C | GLU286 | |
C | LYS362 |