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2GDF

Crystal structure of Dioclea violacea seed lectin

Functional Information from GO Data
ChainGOidnamespacecontents
A0005537molecular_functionD-mannose binding
A0030246molecular_functioncarbohydrate binding
A0035821biological_processmodulation of process of another organism
A0042802molecular_functionidentical protein binding
A0046872molecular_functionmetal ion binding
A0090729molecular_functiontoxin activity
B0005537molecular_functionD-mannose binding
B0030246molecular_functioncarbohydrate binding
B0035821biological_processmodulation of process of another organism
B0042802molecular_functionidentical protein binding
B0046872molecular_functionmetal ion binding
B0090729molecular_functiontoxin activity
C0005537molecular_functionD-mannose binding
C0030246molecular_functioncarbohydrate binding
C0035821biological_processmodulation of process of another organism
C0042802molecular_functionidentical protein binding
C0046872molecular_functionmetal ion binding
C0090729molecular_functiontoxin activity
D0005537molecular_functionD-mannose binding
D0030246molecular_functioncarbohydrate binding
D0035821biological_processmodulation of process of another organism
D0042802molecular_functionidentical protein binding
D0046872molecular_functionmetal ion binding
D0090729molecular_functiontoxin activity
Functional Information from PDB Data
site_idAC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MN B 301
ChainResidue
BGLU8
BASP10
BASP19
BHIS24
BHOH308

site_idAC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE CA B 302
ChainResidue
BHOH313
BASP10
BTYR12
BASN14
BASP19

site_idAC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MN D 1301
ChainResidue
DGLU8
DASP10
DASP19
DHIS24
DHOH1304

site_idAC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE CA D 1302
ChainResidue
DASP10
DTYR12
DASN14
DASP19
DHOH1314

Functional Information from PROSITE/UniProt
site_idPS00307
Number of Residues7
DetailsLECTIN_LEGUME_BETA Legume lectins beta-chain signature. VAVELDS
ChainResidueDetails
AVAL5-SER11

site_idPS00308
Number of Residues10
DetailsLECTIN_LEGUME_ALPHA Legume lectins alpha-chain signature. LPEWVRVGLS
ChainResidueDetails
ALEU85-SER94

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues20
DetailsBINDING:
ChainResidueDetails
AGLU8
BLEU99
CGLU8
CASP10
CASP19
CHIS24
CLEU99
DGLU8
DASP10
DASP19
DHIS24
AASP10
DLEU99
AASP19
AHIS24
ALEU99
BGLU8
BASP10
BASP19
BHIS24

site_idSWS_FT_FI2
Number of Residues8
DetailsBINDING: BINDING => ECO:0000269|PubMed:8812975, ECO:0000269|PubMed:9830028
ChainResidueDetails
ATYR12
AASN14
BTYR12
BASN14
CTYR12
CASN14
DTYR12
DASN14

site_idSWS_FT_FI3
Number of Residues8
DetailsBINDING: BINDING => ECO:0000250
ChainResidueDetails
ASER34
AASP208
BSER34
BASP208
CSER34
CASP208
DSER34
DASP208

site_idSWS_FT_FI4
Number of Residues4
DetailsBINDING: BINDING => ECO:0000269|PubMed:9830028
ChainResidueDetails
AARG228
BARG228
CARG228
DARG228

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PDB entries from 2025-06-18

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