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2GAI

Structure of Full Length Topoisomerase I from Thermotoga maritima in triclinic crystal form

Functional Information from GO Data
ChainGOidnamespacecontents
A0003677molecular_functionDNA binding
A0003916molecular_functionDNA topoisomerase activity
A0003917molecular_functionDNA topoisomerase type I (single strand cut, ATP-independent) activity
A0006265biological_processDNA topological change
A0046872molecular_functionmetal ion binding
A0140226molecular_functionRNA topoisomerase activity
B0003677molecular_functionDNA binding
B0003916molecular_functionDNA topoisomerase activity
B0003917molecular_functionDNA topoisomerase type I (single strand cut, ATP-independent) activity
B0006265biological_processDNA topological change
B0046872molecular_functionmetal ion binding
B0140226molecular_functionRNA topoisomerase activity
Functional Information from PROSITE/UniProt
site_idPS00396
Number of Residues23
DetailsTOPO_IA_1 Topoisomerase (Topo) IA-type active site signature. QqLYEgvetkdghiaf.ITYmRTD
ChainResidueDetails
AGLN270-ASP292

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues42
DetailsZN_FING: C4-type
ChainResidueDetails
ACYS559-CYS580
BCYS559-CYS580

site_idSWS_FT_FI2
Number of Residues2
DetailsACT_SITE: O-(5'-phospho-DNA)-tyrosine intermediate => ECO:0000255|PROSITE-ProRule:PRU01383
ChainResidueDetails
ATYR288
BTYR288

site_idSWS_FT_FI3
Number of Residues4
DetailsBINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_00952
ChainResidueDetails
AGLU12
AASP84
BGLU12
BASP84

site_idSWS_FT_FI4
Number of Residues16
DetailsSITE: Interaction with DNA => ECO:0000255|HAMAP-Rule:MF_00952
ChainResidueDetails
AHIS36
BARG140
BARG141
BASP144
BTYR149
BTRP156
BARG290
BARG475
AARG140
AARG141
AASP144
ATYR149
ATRP156
AARG290
AARG475
BHIS36

Catalytic Information from CSA
site_idCSA1
Number of Residues4
DetailsAnnotated By Reference To The Literature 1ecl
ChainResidueDetails
AHIS334
AASP84
ATYR288
AGLU12

site_idCSA2
Number of Residues4
DetailsAnnotated By Reference To The Literature 1ecl
ChainResidueDetails
BHIS334
BASP84
BTYR288
BGLU12

227561

PDB entries from 2024-11-20

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