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2G9H

Crystal Structure of Staphylococcal Enterotoxin I (SEI) in Complex with a Human MHC class II Molecule

Functional Information from GO Data
ChainGOidnamespacecontents
A0006955biological_processimmune response
A0016020cellular_componentmembrane
A0019882biological_processantigen processing and presentation
A0042613cellular_componentMHC class II protein complex
B0006955biological_processimmune response
B0016020cellular_componentmembrane
B0019882biological_processantigen processing and presentation
B0042613cellular_componentMHC class II protein complex
D0005576cellular_componentextracellular region
D0035821biological_processmodulation of process of another organism
D0046872molecular_functionmetal ion binding
D0090729molecular_functiontoxin activity
Functional Information from PDB Data
site_idAC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN D 501
ChainResidue
BHIS81
DHIS169
DHIS207
DASP209

site_idAC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 D 801
ChainResidue
DLYS174
DSER175
DHOH873
DHOH912

site_idAC3
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 A 802
ChainResidue
ATRP168
AHOH805
AASN118

site_idAC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 A 803
ChainResidue
AARG123
AASN124
ALYS126
AHOH952

site_idAC5
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 C 804
ChainResidue
ASER53
CPRO306
CLYS307
CHOH330

site_idAC6
Number of Residues10
DetailsBINDING SITE FOR RESIDUE EPE A 601
ChainResidue
APRO96
AVAL97
AGLU98
AHOH810
AHOH944
BTYR102
BHOH279
DASN28
DLEU29
DTRP51

site_idAC7
Number of Residues7
DetailsBINDING SITE FOR RESIDUE DIO A 701
ChainResidue
AASN84
ATRP168
AASP171
AHOH826
BTHR3
BARG4
BARG6

site_idAC8
Number of Residues4
DetailsBINDING SITE FOR RESIDUE DIO A 702
ChainResidue
ALYS111
AARG140
AHOH920
AHOH942

Functional Information from PROSITE/UniProt
site_idPS00278
Number of Residues24
DetailsSTAPH_STREP_TOXIN_2 Staphyloccocal enterotoxin/Streptococcal pyrogenic exotoxin signature 2. KklVtaqeIDvklRryLqeeynIY
ChainResidueDetails
DLYS117-TYR140

site_idPS00290
Number of Residues7
DetailsIG_MHC Immunoglobulins and major histocompatibility complex proteins signature. YTCQVEH
ChainResidueDetails
BTYR171-HIS177
ATYR161-HIS167

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsBINDING: BINDING => ECO:0000269|PubMed:31619516, ECO:0000269|PubMed:8145819
ChainResidueDetails
BASP57
BTRP61
BHIS81
BASN82

site_idSWS_FT_FI2
Number of Residues1
DetailsBINDING: BINDING => ECO:0000269|PubMed:8145819
ChainResidueDetails
BARG93
AALA52

site_idSWS_FT_FI3
Number of Residues1
DetailsCARBOHYD: N-linked (GlcNAc...) asparagine => ECO:0000269|PubMed:19303388, ECO:0000269|PubMed:24190431
ChainResidueDetails
BASN19

site_idSWS_FT_FI4
Number of Residues1
DetailsSITE: Self- and pathogen-derived peptide antigen => ECO:0000269|PubMed:17583734, ECO:0000269|PubMed:21115828, ECO:0000269|PubMed:31619516, ECO:0000269|PubMed:8145819
ChainResidueDetails
ASER53

site_idSWS_FT_FI5
Number of Residues1
DetailsSITE: Pathogen-derived peptide antigen => ECO:0000269|PubMed:23260142, ECO:0007744|PDB:4GBX
ChainResidueDetails
AGLU55

site_idSWS_FT_FI6
Number of Residues1
DetailsSITE: Self- and pathogen-derived peptide antigen => ECO:0000269|PubMed:17583734, ECO:0000269|PubMed:21115828, ECO:0000269|PubMed:23260142, ECO:0000269|PubMed:31619516, ECO:0000269|PubMed:8145819, ECO:0007744|PDB:4GBX
ChainResidueDetails
AASN62

site_idSWS_FT_FI7
Number of Residues1
DetailsSITE: Pathogen-derived peptide antigen => ECO:0000269|PubMed:17583734, ECO:0000269|PubMed:21115828, ECO:0000269|PubMed:23260142, ECO:0000269|PubMed:8145819, ECO:0007744|PDB:4FQX, ECO:0007744|PDB:4GBX
ChainResidueDetails
AASN69

site_idSWS_FT_FI8
Number of Residues1
DetailsSITE: Self- and pathogen-derived peptide antigen => ECO:0000269|PubMed:17583734, ECO:0000269|PubMed:23260142, ECO:0000269|PubMed:31619516, ECO:0000269|PubMed:8145819, ECO:0007744|PDB:4FQX, ECO:0007744|PDB:4GBX
ChainResidueDetails
AARG76

site_idSWS_FT_FI9
Number of Residues2
DetailsCARBOHYD: N-linked (GlcNAc...) asparagine => ECO:0000269|PubMed:19159218, ECO:0000269|PubMed:7477400
ChainResidueDetails
AASN78
AASN118

222415

PDB entries from 2024-07-10

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