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2G8S

Crystal structure of the soluble Aldose sugar dehydrogenase (Asd) from Escherichia coli in the apo-form

Functional Information from GO Data
ChainGOidnamespacecontents
A0005509molecular_functioncalcium ion binding
A0009279cellular_componentcell outer membrane
A0016491molecular_functionoxidoreductase activity
A0016901molecular_functionoxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor
A0030288cellular_componentouter membrane-bounded periplasmic space
A0046872molecular_functionmetal ion binding
A0070968molecular_functionpyrroloquinoline quinone binding
B0005509molecular_functioncalcium ion binding
B0009279cellular_componentcell outer membrane
B0016491molecular_functionoxidoreductase activity
B0016901molecular_functionoxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor
B0030288cellular_componentouter membrane-bounded periplasmic space
B0046872molecular_functionmetal ion binding
B0070968molecular_functionpyrroloquinoline quinone binding
Functional Information from PDB Data
site_idAC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CA B 2001
ChainResidue
BGLU220
BTYR230
BHOH3023
BHOH3024
BHOH3038
BHOH3043

site_idAC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CA A 2002
ChainResidue
AHOH3029
AHOH3037
AHOH3060
AGLU220
ATYR230
AHOH3027

site_idAC3
Number of Residues8
DetailsBINDING SITE FOR RESIDUE PO4 A 2003
ChainResidue
ATHR114
AVAL115
APHE116
AARG117
AHOH3105
AHOH3502
BGLY44
BHOH3252

site_idAC4
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO B 3001
ChainResidue
BLYS13
BASP15
BLEU33
BHOH3162
BHOH3213
BHOH3326

site_idAC5
Number of Residues8
DetailsBINDING SITE FOR RESIDUE EDO A 3002
ChainResidue
AARG194
AGLU212
AGLY214
AGLY218
ATRP232
ATHR236
AHOH3028
AHOH3037

site_idAC6
Number of Residues8
DetailsBINDING SITE FOR RESIDUE EDO B 3003
ChainResidue
BARG194
BGLU212
BGLY214
BGLY218
BTRP232
BTHR236
BHOH3026
BHOH3043

site_idAC7
Number of Residues7
DetailsBINDING SITE FOR RESIDUE EDO B 3004
ChainResidue
BTRP18
BARG131
BGLN197
BSER271
BGLY272
BARG323
BASP324

site_idAC8
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO B 3005
ChainResidue
BTHR114
BVAL115
BARG117
BHOH3422
BHOH3521
BHOH3542

site_idAC9
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO A 3006
ChainResidue
ATRP18
AARG131
ASER271
AGLY272
AARG323
AASP324

site_idBC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO A 3007
ChainResidue
ATRP204
AGLN286
AVAL303
AGLY305
AEDO3024
AHOH3034

site_idBC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO B 3008
ChainResidue
BTRP204
BGLN286
BVAL303
BGLY305
BHOH3029

site_idBC3
Number of Residues3
DetailsBINDING SITE FOR RESIDUE EDO B 3009
ChainResidue
BHIS16
BARG34
BGLY63

site_idBC4
Number of Residues8
DetailsBINDING SITE FOR RESIDUE EDO B 3010
ChainResidue
AASP111
BVAL5
BASP317
BARG318
BARG350
BEDO3022
BHOH3123
BHOH3446

site_idBC5
Number of Residues8
DetailsBINDING SITE FOR RESIDUE EDO A 3011
ChainResidue
ALYS13
AASP15
ALEU33
AHOH3178
AHOH3181
AHOH3280
AHOH3320
AHOH3343

site_idBC6
Number of Residues2
DetailsBINDING SITE FOR RESIDUE EDO A 3012
ChainResidue
AVAL7
AARG318

site_idBC7
Number of Residues7
DetailsBINDING SITE FOR RESIDUE EDO B 3013
ChainResidue
BHOH3535
BPRO24
BHIS27
BARG78
BLEU106
BHOH3441
BHOH3448

site_idBC8
Number of Residues7
DetailsBINDING SITE FOR RESIDUE EDO B 3014
ChainResidue
BPHE22
BMSE29
BTYR334
BHOH3060
BHOH3259
BHOH3320
BHOH3439

site_idBC9
Number of Residues7
DetailsBINDING SITE FOR RESIDUE EDO B 3015
ChainResidue
BALA71
BPRO72
BASP73
BASP168
BGLN169
BHOH3055
BHOH3373

site_idCC1
Number of Residues8
DetailsBINDING SITE FOR RESIDUE EDO A 3016
ChainResidue
APRO24
AHIS27
APHE74
AARG78
ALEU106
AHOH3457
AHOH3467
AHOH3496

site_idCC2
Number of Residues7
DetailsBINDING SITE FOR RESIDUE EDO A 3017
ChainResidue
AALA71
APRO72
AASP73
AASP168
AGLN169
AHOH3083
AHOH3438

site_idCC3
Number of Residues3
DetailsBINDING SITE FOR RESIDUE EDO B 3018
ChainResidue
BARG216
BTRP237
BLYS265

site_idCC4
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO A 3019
ChainResidue
ATYR334
ALYS346
AEDO3020
AHOH3127
AHOH3437
BARG117

site_idCC5
Number of Residues7
DetailsBINDING SITE FOR RESIDUE EDO A 3020
ChainResidue
APHE22
AMSE29
APRO329
ATYR334
AEDO3019
AHOH3059
AHOH3209

site_idCC6
Number of Residues3
DetailsBINDING SITE FOR RESIDUE EDO A 3021
ChainResidue
AARG216
ATRP237
ALYS265

site_idCC7
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO B 3022
ChainResidue
BVAL7
BVAL9
BARG318
BEDO3010
BHOH3372

site_idCC8
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO A 3023
ChainResidue
AASP311
AGLY312
AHOH3410
AHOH3427
AHOH3498

site_idCC9
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO A 3024
ChainResidue
ATRP204
AGLN286
AEDO3007
AHOH3193

site_idDC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO A 3025
ChainResidue
AHIS16
AARG34
AGLY35
AHOH3445

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsACT_SITE: Proton acceptor => ECO:0000250
ChainResidueDetails
AHIS127
BHIS127

site_idSWS_FT_FI2
Number of Residues8
DetailsBINDING: BINDING => ECO:0000269|PubMed:16864586
ChainResidueDetails
AGLN62
AGLU220
ATYR230
ATYR241
BGLN62
BGLU220
BTYR230
BTYR241

Catalytic Information from CSA
site_idCSA1
Number of Residues2
DetailsAnnotated By Reference To The Literature 1c9u
ChainResidueDetails
AHIS127
AGLU146

site_idCSA2
Number of Residues2
DetailsAnnotated By Reference To The Literature 1c9u
ChainResidueDetails
BHIS127
BGLU146

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PDB entries from 2024-10-02

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