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2FV7

Crystal structure of human ribokinase

Functional Information from GO Data
ChainGOidnamespacecontents
A0004747molecular_functionribokinase activity
A0005515molecular_functionprotein binding
A0005524molecular_functionATP binding
A0005634cellular_componentnucleus
A0005737cellular_componentcytoplasm
A0005829cellular_componentcytosol
A0006014biological_processD-ribose metabolic process
A0006098biological_processpentose-phosphate shunt
A0006753biological_processnucleoside phosphate metabolic process
A0016301molecular_functionkinase activity
A0019303biological_processD-ribose catabolic process
A0042802molecular_functionidentical protein binding
A0046835biological_processcarbohydrate phosphorylation
A0046872molecular_functionmetal ion binding
B0004747molecular_functionribokinase activity
B0005515molecular_functionprotein binding
B0005524molecular_functionATP binding
B0005634cellular_componentnucleus
B0005737cellular_componentcytoplasm
B0005829cellular_componentcytosol
B0006014biological_processD-ribose metabolic process
B0006098biological_processpentose-phosphate shunt
B0006753biological_processnucleoside phosphate metabolic process
B0016301molecular_functionkinase activity
B0019303biological_processD-ribose catabolic process
B0042802molecular_functionidentical protein binding
B0046835biological_processcarbohydrate phosphorylation
B0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE NA A 403
ChainResidue
AASP263
ASER301
AALA304
ASER310
AHOH878
AHOH879

site_idAC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE MG A 404
ChainResidue
AHOH825
AADP401
AHOH817
AHOH819

site_idAC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE NA B 405
ChainResidue
BASP263
BSER301
BALA304
BSER310
BHOH845
BHOH853

site_idAC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG B 406
ChainResidue
BADP402
BHOH842
BHOH859
BHOH864
BHOH871

site_idAC5
Number of Residues16
DetailsBINDING SITE FOR RESIDUE ADP A 401
ChainResidue
AASN199
ATHR235
ALEU236
AGLY237
AGLY240
ATHR256
AGLU257
AVAL259
AALA267
AGLY268
AASN295
AALA298
AVAL302
AMG404
AHOH805
AHOH856

site_idAC6
Number of Residues14
DetailsBINDING SITE FOR RESIDUE ADP B 402
ChainResidue
BASN199
BTHR235
BLEU236
BGLY237
BALA238
BGLY240
BTHR256
BGLU257
BVAL259
BGLY268
BASN295
BALA298
BMG406
BHOH871

site_idAC7
Number of Residues7
DetailsBINDING SITE FOR RESIDUE UNX A 501
ChainResidue
AVAL21
AGLY22
ACYS151
AGLN152
AILE155
ASER160
AHOH801

site_idAC8
Number of Residues5
DetailsBINDING SITE FOR RESIDUE UNX B 502
ChainResidue
BVAL21
BGLN152
BILE155
BSER160
BHOH807

site_idAC9
Number of Residues2
DetailsBINDING SITE FOR RESIDUE UNX B 503
ChainResidue
BGLY53
BASN57

site_idBC1
Number of Residues1
DetailsBINDING SITE FOR RESIDUE UNX B 504
ChainResidue
BLYS173

site_idBC2
Number of Residues1
DetailsBINDING SITE FOR RESIDUE UNX B 505
ChainResidue
BASP78

site_idBC3
Number of Residues2
DetailsBINDING SITE FOR RESIDUE UNX A 506
ChainResidue
ALYS173
AASP194

site_idBC4
Number of Residues2
DetailsBINDING SITE FOR RESIDUE UNX A 507
ChainResidue
AGLY171
BLYS46

site_idBC5
Number of Residues3
DetailsBINDING SITE FOR RESIDUE UNX A 510
ChainResidue
ALYS54
AASP269
AHOH856

site_idBC6
Number of Residues1
DetailsBINDING SITE FOR RESIDUE UNX B 511
ChainResidue
BPHE51

Functional Information from PROSITE/UniProt
site_idPS00584
Number of Residues14
DetailsPFKB_KINASES_2 pfkB family of carbohydrate kinases signature 2. DTtGAGDsfvGALA
ChainResidueDetails
AASP263-ALA276

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsACT_SITE: Proton acceptor => ECO:0000250|UniProtKB:P0A9J6, ECO:0000255|HAMAP-Rule:MF_03215
ChainResidueDetails
AASP269
BASP269

site_idSWS_FT_FI2
Number of Residues12
DetailsBINDING: BINDING => ECO:0000250|UniProtKB:P0A9J6, ECO:0000255|HAMAP-Rule:MF_03215
ChainResidueDetails
AMET25
BTHR265
BASP269
BGLY306
AGLY53
AGLU154
ATHR265
AASP269
AGLY306
BMET25
BGLY53
BGLU154

site_idSWS_FT_FI3
Number of Residues10
DetailsBINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_03215, ECO:0000269|Ref.7
ChainResidueDetails
AASN199
BASN295
ATHR235
ATHR256
AGLY268
AASN295
BASN199
BTHR235
BTHR256
BGLY268

site_idSWS_FT_FI4
Number of Residues8
DetailsBINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_03215, ECO:0000305|Ref.7
ChainResidueDetails
AASP263
ASER301
AALA304
ASER310
BASP263
BSER301
BALA304
BSER310

Catalytic Information from CSA
site_idCSA1
Number of Residues4
DetailsAnnotated By Reference To The Literature 1rk2
ChainResidueDetails
AGLY266
AGLY268
AASP269
AALA267

site_idCSA2
Number of Residues4
DetailsAnnotated By Reference To The Literature 1rk2
ChainResidueDetails
BGLY266
BGLY268
BASP269
BALA267

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PDB entries from 2024-07-24

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