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2F64

Crystal structure of Nucleoside 2-deoxyribosyltransferase from Trypanosoma brucei at 1.6 A resolution with 1-METHYLQUINOLIN-2(1H)-ONE bound

Functional Information from GO Data
ChainGOidnamespacecontents
A0005634cellular_componentnucleus
A0005737cellular_componentcytoplasm
A0009159biological_processdeoxyribonucleoside monophosphate catabolic process
A0031981cellular_componentnuclear lumen
A0070694molecular_function5-hydroxymethyl-dUMP N-hydrolase activity
B0005634cellular_componentnucleus
B0005737cellular_componentcytoplasm
B0009159biological_processdeoxyribonucleoside monophosphate catabolic process
B0031981cellular_componentnuclear lumen
B0070694molecular_function5-hydroxymethyl-dUMP N-hydrolase activity
Functional Information from PDB Data
site_idAC1
Number of Residues8
DetailsBINDING SITE FOR RESIDUE SO4 B 461
ChainResidue
BHIS6
BHIS8
BMSE9
BLYS11
BARG112
BARG125
BHOH523
BHOH624

site_idAC2
Number of Residues7
DetailsBINDING SITE FOR RESIDUE SO4 A 463
ChainResidue
AHIS8
AMSE9
ALYS11
AARG112
AHOH630
AHOH639
AHIS6

site_idAC3
Number of Residues20
DetailsBINDING SITE FOR RESIDUE 12Q B 471
ChainResidue
AVAL19
AGLU50
AILE57
AGLU127
AASN134
ALEU135
AMSE136
AGOL462
A12Q472
BVAL19
BPHE20
BPRO46
BTHR47
BGLU50
BILE57
BGLU127
BASN134
BLEU135
BMSE136
BGOL464

site_idAC4
Number of Residues20
DetailsBINDING SITE FOR RESIDUE 12Q A 472
ChainResidue
AVAL19
APHE20
APRO46
ATHR47
AGLU50
AILE57
AGLU127
AASN134
ALEU135
AMSE136
AGOL462
BVAL19
BGLU50
BILE57
BGLU127
BASN134
BLEU135
BMSE136
BGOL464
B12Q471

site_idAC5
Number of Residues11
DetailsBINDING SITE FOR RESIDUE GOL A 462
ChainResidue
AALA15
AGLY16
AVAL19
APHE20
AASP84
AGLY86
ATHR87
AGLU90
A12Q472
BASN134
B12Q471

site_idAC6
Number of Residues11
DetailsBINDING SITE FOR RESIDUE GOL B 464
ChainResidue
AASN134
A12Q472
BALA15
BGLY16
BVAL19
BPHE20
BASP84
BGLY86
BTHR87
BGLU90
B12Q471

Catalytic Information from CSA
site_idCSA1
Number of Residues4
DetailsAnnotated By Reference To The Literature 1f8x
ChainResidueDetails
ATYR13
AGLU90
AASN61
AASP84

site_idCSA2
Number of Residues4
DetailsAnnotated By Reference To The Literature 1f8x
ChainResidueDetails
BTYR13
BGLU90
BASN61
BASP84

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PDB entries from 2025-06-11

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