2F2H
Structure of the YicI thiosugar Michaelis complex
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0003824 | molecular_function | catalytic activity |
A | 0004553 | molecular_function | hydrolase activity, hydrolyzing O-glycosyl compounds |
A | 0005975 | biological_process | carbohydrate metabolic process |
A | 0016798 | molecular_function | hydrolase activity, acting on glycosyl bonds |
A | 0030246 | molecular_function | carbohydrate binding |
A | 0042802 | molecular_function | identical protein binding |
A | 0061634 | molecular_function | alpha-D-xyloside xylohydrolase |
A | 0080176 | molecular_function | xyloglucan 1,6-alpha-xylosidase activity |
B | 0003824 | molecular_function | catalytic activity |
B | 0004553 | molecular_function | hydrolase activity, hydrolyzing O-glycosyl compounds |
B | 0005975 | biological_process | carbohydrate metabolic process |
B | 0016798 | molecular_function | hydrolase activity, acting on glycosyl bonds |
B | 0030246 | molecular_function | carbohydrate binding |
B | 0042802 | molecular_function | identical protein binding |
B | 0061634 | molecular_function | alpha-D-xyloside xylohydrolase |
B | 0080176 | molecular_function | xyloglucan 1,6-alpha-xylosidase activity |
C | 0003824 | molecular_function | catalytic activity |
C | 0004553 | molecular_function | hydrolase activity, hydrolyzing O-glycosyl compounds |
C | 0005975 | biological_process | carbohydrate metabolic process |
C | 0016798 | molecular_function | hydrolase activity, acting on glycosyl bonds |
C | 0030246 | molecular_function | carbohydrate binding |
C | 0042802 | molecular_function | identical protein binding |
C | 0061634 | molecular_function | alpha-D-xyloside xylohydrolase |
C | 0080176 | molecular_function | xyloglucan 1,6-alpha-xylosidase activity |
D | 0003824 | molecular_function | catalytic activity |
D | 0004553 | molecular_function | hydrolase activity, hydrolyzing O-glycosyl compounds |
D | 0005975 | biological_process | carbohydrate metabolic process |
D | 0016798 | molecular_function | hydrolase activity, acting on glycosyl bonds |
D | 0030246 | molecular_function | carbohydrate binding |
D | 0042802 | molecular_function | identical protein binding |
D | 0061634 | molecular_function | alpha-D-xyloside xylohydrolase |
D | 0080176 | molecular_function | xyloglucan 1,6-alpha-xylosidase activity |
E | 0003824 | molecular_function | catalytic activity |
E | 0004553 | molecular_function | hydrolase activity, hydrolyzing O-glycosyl compounds |
E | 0005975 | biological_process | carbohydrate metabolic process |
E | 0016798 | molecular_function | hydrolase activity, acting on glycosyl bonds |
E | 0030246 | molecular_function | carbohydrate binding |
E | 0042802 | molecular_function | identical protein binding |
E | 0061634 | molecular_function | alpha-D-xyloside xylohydrolase |
E | 0080176 | molecular_function | xyloglucan 1,6-alpha-xylosidase activity |
F | 0003824 | molecular_function | catalytic activity |
F | 0004553 | molecular_function | hydrolase activity, hydrolyzing O-glycosyl compounds |
F | 0005975 | biological_process | carbohydrate metabolic process |
F | 0016798 | molecular_function | hydrolase activity, acting on glycosyl bonds |
F | 0030246 | molecular_function | carbohydrate binding |
F | 0042802 | molecular_function | identical protein binding |
F | 0061634 | molecular_function | alpha-D-xyloside xylohydrolase |
F | 0080176 | molecular_function | xyloglucan 1,6-alpha-xylosidase activity |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE SO4 F 3001 |
Chain | Residue |
F | THR246 |
F | ARG583 |
F | HOH3246 |
site_id | AC2 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE SO4 D 3002 |
Chain | Residue |
D | THR246 |
D | ARG583 |
D | HOH3087 |
site_id | AC3 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE SO4 F 3003 |
Chain | Residue |
F | VAL681 |
F | HOH3093 |
F | HOH3277 |
F | HOH3315 |
A | LYS403 |
F | ARG677 |
F | TYR680 |
site_id | AC4 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE SO4 E 3004 |
Chain | Residue |
E | THR246 |
E | ARG583 |
E | HOH3065 |
site_id | AC5 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE SO4 C 3005 |
Chain | Residue |
C | THR246 |
C | LYS248 |
C | ARG583 |
C | HOH3228 |
site_id | AC6 |
Number of Residues | 2 |
Details | BINDING SITE FOR RESIDUE SO4 B 3006 |
Chain | Residue |
B | THR246 |
B | ARG583 |
site_id | AC7 |
Number of Residues | 2 |
Details | BINDING SITE FOR RESIDUE SO4 F 3007 |
Chain | Residue |
F | ARG333 |
F | ARG334 |
site_id | AC8 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE SO4 A 3008 |
Chain | Residue |
A | THR246 |
A | LYS248 |
A | ARG583 |
A | HOH3191 |
site_id | AC9 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE SO4 E 3009 |
Chain | Residue |
E | GLU24 |
E | VAL25 |
E | ASN96 |
E | LYS114 |
site_id | BC1 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE MPO B 3010 |
Chain | Residue |
B | HIS640 |
B | ASP642 |
B | GLN653 |
B | HIS654 |
B | GLY655 |
B | SER658 |
B | HOH3282 |
site_id | BC2 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE MPO C 3011 |
Chain | Residue |
C | HIS640 |
C | ASP642 |
C | GLN653 |
C | HIS654 |
C | GLY655 |
C | SER658 |
C | HOH3347 |
site_id | BC3 |
Number of Residues | 8 |
Details | BINDING SITE FOR RESIDUE MPO D 3012 |
Chain | Residue |
D | HIS640 |
D | ASP642 |
D | GLN652 |
D | GLN653 |
D | HIS654 |
D | GLY655 |
D | SER658 |
D | HOH3325 |
site_id | BC4 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE MPO E 3013 |
Chain | Residue |
D | HOH3303 |
E | HIS640 |
E | GLN652 |
E | GLN653 |
E | HIS654 |
E | GLY655 |
E | SER658 |
site_id | BC5 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE MPO F 3014 |
Chain | Residue |
F | HIS640 |
F | GLN653 |
F | HIS654 |
F | GLY655 |
F | SER658 |
F | HOH3153 |
site_id | BC6 |
Number of Residues | 21 |
Details | BINDING SITE FOR RESIDUE XTG A 3015 |
Chain | Residue |
A | ASP185 |
A | PHE277 |
A | THR278 |
A | ASP306 |
A | CYS307 |
A | TRP380 |
A | LYS414 |
A | ASP416 |
A | ARG466 |
A | TRP479 |
A | ASP482 |
A | PHE515 |
A | HIS540 |
A | SER542 |
A | HOH3030 |
A | HOH3033 |
A | HOH3118 |
A | HOH3157 |
B | THR45 |
B | LEU48 |
B | ASP49 |
site_id | BC7 |
Number of Residues | 17 |
Details | BINDING SITE FOR RESIDUE XTG B 3016 |
Chain | Residue |
B | HOH3035 |
B | HOH3068 |
C | TRP8 |
F | LEU48 |
F | ASP49 |
F | HOH3224 |
B | ASP185 |
B | ASP306 |
B | TRP380 |
B | LYS414 |
B | ASP416 |
B | ARG466 |
B | TRP479 |
B | ASP482 |
B | PHE515 |
B | HIS540 |
B | SER542 |
site_id | BC8 |
Number of Residues | 22 |
Details | BINDING SITE FOR RESIDUE XTG C 3017 |
Chain | Residue |
C | ASP185 |
C | PHE277 |
C | THR278 |
C | ASP306 |
C | CYS307 |
C | TRP380 |
C | LYS414 |
C | ASP416 |
C | PHE417 |
C | ARG466 |
C | TRP479 |
C | ASP482 |
C | PHE515 |
C | HIS540 |
C | SER542 |
C | LYS543 |
C | HOH3049 |
C | HOH3085 |
C | HOH3189 |
C | HOH3273 |
D | THR45 |
D | ASP49 |
site_id | BC9 |
Number of Residues | 17 |
Details | BINDING SITE FOR RESIDUE XTG D 3018 |
Chain | Residue |
D | ASP185 |
D | ASP306 |
D | LYS414 |
D | ASP416 |
D | ARG420 |
D | ARG466 |
D | TRP479 |
D | ASP482 |
D | PHE515 |
D | ARG538 |
D | HIS540 |
D | LYS543 |
D | HOH3167 |
D | HOH3284 |
E | THR45 |
E | ASP49 |
E | HOH3117 |
site_id | CC1 |
Number of Residues | 19 |
Details | BINDING SITE FOR RESIDUE XTG E 3019 |
Chain | Residue |
C | ASP49 |
E | ASP185 |
E | PHE277 |
E | THR278 |
E | ASP306 |
E | TRP380 |
E | ASP416 |
E | PHE417 |
E | ARG466 |
E | TRP479 |
E | ASP482 |
E | PHE515 |
E | HIS540 |
E | SER542 |
E | LYS543 |
E | HOH3120 |
E | HOH3153 |
E | HOH3273 |
F | TRP8 |
site_id | CC2 |
Number of Residues | 18 |
Details | BINDING SITE FOR RESIDUE XTG F 3020 |
Chain | Residue |
A | LEU48 |
A | ASP49 |
F | ASP185 |
F | PHE277 |
F | ASP306 |
F | TRP380 |
F | LYS414 |
F | ASP416 |
F | ARG466 |
F | TRP479 |
F | ASP482 |
F | PHE515 |
F | HIS540 |
F | LYS543 |
F | HOH3038 |
F | HOH3052 |
F | HOH3149 |
F | HOH3234 |
site_id | CC3 |
Number of Residues | 12 |
Details | BINDING SITE FOR RESIDUE XTG F 3021 |
Chain | Residue |
A | GLU329 |
F | TRP267 |
F | HIS301 |
F | LYS336 |
F | ALA337 |
F | GLY339 |
F | LEU340 |
F | ARG677 |
F | PRO678 |
F | ASP679 |
F | HOH3047 |
F | HOH3062 |
site_id | CC4 |
Number of Residues | 10 |
Details | BINDING SITE FOR RESIDUE GOL F 3022 |
Chain | Residue |
A | THR455 |
A | VAL456 |
F | PRO265 |
F | ALA266 |
F | TRP267 |
F | GLU460 |
F | TYR574 |
F | ASP679 |
F | HOH3273 |
F | HOH3274 |
site_id | CC5 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE GOL C 3023 |
Chain | Residue |
C | ARG68 |
C | ASN211 |
C | GLU238 |
C | GOL3030 |
C | HOH3081 |
C | HOH3218 |
C | HOH3365 |
site_id | CC6 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE GOL A 3024 |
Chain | Residue |
A | GLN27 |
A | ASP29 |
A | VAL92 |
A | THR93 |
A | ILE94 |
A | HOH3308 |
site_id | CC7 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE GOL B 3025 |
Chain | Residue |
B | GLU31 |
B | PHE58 |
B | ARG68 |
B | GLU238 |
B | GOL3026 |
site_id | CC8 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE GOL B 3026 |
Chain | Residue |
B | ARG68 |
B | HIS81 |
B | ASN211 |
B | GLU238 |
B | GOL3025 |
B | HOH3238 |
B | HOH3285 |
site_id | CC9 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE GOL C 3027 |
Chain | Residue |
B | TRP8 |
C | ASP482 |
C | TYR484 |
C | PHE515 |
C | HOH3266 |
site_id | DC1 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE GOL A 3028 |
Chain | Residue |
A | GLU31 |
A | PHE58 |
A | ARG68 |
A | GLU238 |
A | GOL3029 |
A | HOH3342 |
site_id | DC2 |
Number of Residues | 8 |
Details | BINDING SITE FOR RESIDUE GOL A 3029 |
Chain | Residue |
A | ARG68 |
A | HIS81 |
A | ASN211 |
A | GLU238 |
A | GOL3028 |
A | HOH3127 |
A | HOH3137 |
A | HOH3333 |
site_id | DC3 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE GOL C 3030 |
Chain | Residue |
C | GLU31 |
C | PHE58 |
C | ARG68 |
C | GLU238 |
C | GOL3023 |
C | HOH3365 |
site_id | DC4 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE GOL D 3031 |
Chain | Residue |
D | GLU31 |
D | PHE58 |
D | ARG68 |
D | GLU238 |
D | HOH3318 |
D | HOH3322 |
site_id | DC5 |
Number of Residues | 8 |
Details | BINDING SITE FOR RESIDUE GOL D 3032 |
Chain | Residue |
D | ARG68 |
D | HIS81 |
D | LEU84 |
D | ASN211 |
D | GLU238 |
D | HOH3098 |
D | HOH3145 |
D | HOH3209 |
site_id | DC6 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE GOL E 3033 |
Chain | Residue |
E | GLU31 |
E | PHE58 |
E | ARG68 |
E | GLU238 |
E | HOH3191 |
site_id | DC7 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE GOL F 3034 |
Chain | Residue |
F | GLU31 |
F | PHE58 |
F | ARG68 |
F | GLU238 |
site_id | DC8 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE GOL E 3035 |
Chain | Residue |
E | ASP482 |
E | TYR484 |
E | PHE515 |
E | GLU516 |
F | TRP8 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 6 |
Details | ACT_SITE: Nucleophile => ECO:0000269|PubMed:15501829 |
Chain | Residue | Details |
A | ASP416 | |
B | ASP416 | |
C | ASP416 | |
D | ASP416 | |
E | ASP416 | |
F | ASP416 |
site_id | SWS_FT_FI2 |
Number of Residues | 6 |
Details | ACT_SITE: ACT_SITE => ECO:0000269|PubMed:15501829 |
Chain | Residue | Details |
A | GLU419 | |
B | GLU419 | |
C | GLU419 | |
D | GLU419 | |
E | GLU419 | |
F | GLU419 |
site_id | SWS_FT_FI3 |
Number of Residues | 6 |
Details | ACT_SITE: Proton donor => ECO:0000269|PubMed:15501829 |
Chain | Residue | Details |
A | ASP482 | |
B | ASP482 | |
C | ASP482 | |
D | ASP482 | |
E | ASP482 | |
F | ASP482 |