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2F1O

Crystal Structure of NQO1 with Dicoumarol

Functional Information from GO Data
ChainGOidnamespacecontents
A0000209biological_processprotein polyubiquitination
A0003723molecular_functionRNA binding
A0003955molecular_functionNAD(P)H dehydrogenase (quinone) activity
A0004128molecular_functioncytochrome-b5 reductase activity, acting on NAD(P)H
A0005515molecular_functionprotein binding
A0005634cellular_componentnucleus
A0005737cellular_componentcytoplasm
A0005829cellular_componentcytosol
A0006743biological_processubiquinone metabolic process
A0006805biological_processxenobiotic metabolic process
A0006809biological_processnitric oxide biosynthetic process
A0006979biological_processresponse to oxidative stress
A0007271biological_processsynaptic transmission, cholinergic
A0008753molecular_functionNADPH dehydrogenase (quinone) activity
A0009636biological_processresponse to toxic substance
A0016491molecular_functionoxidoreductase activity
A0019430biological_processremoval of superoxide radicals
A0030163biological_processprotein catabolic process
A0032496biological_processresponse to lipopolysaccharide
A0034599biological_processcellular response to oxidative stress
A0042177biological_processnegative regulation of protein catabolic process
A0042360biological_processvitamin E metabolic process
A0042373biological_processvitamin K metabolic process
A0042802molecular_functionidentical protein binding
A0045087biological_processinnate immune response
A0045202cellular_componentsynapse
A0045454biological_processcell redox homeostasis
A0050136molecular_functionNADH dehydrogenase (quinone) (non-electrogenic) activity
A0061771biological_processresponse to caloric restriction
A0110076biological_processnegative regulation of ferroptosis
B0000209biological_processprotein polyubiquitination
B0003723molecular_functionRNA binding
B0003955molecular_functionNAD(P)H dehydrogenase (quinone) activity
B0004128molecular_functioncytochrome-b5 reductase activity, acting on NAD(P)H
B0005515molecular_functionprotein binding
B0005634cellular_componentnucleus
B0005737cellular_componentcytoplasm
B0005829cellular_componentcytosol
B0006743biological_processubiquinone metabolic process
B0006805biological_processxenobiotic metabolic process
B0006809biological_processnitric oxide biosynthetic process
B0006979biological_processresponse to oxidative stress
B0007271biological_processsynaptic transmission, cholinergic
B0008753molecular_functionNADPH dehydrogenase (quinone) activity
B0009636biological_processresponse to toxic substance
B0016491molecular_functionoxidoreductase activity
B0019430biological_processremoval of superoxide radicals
B0030163biological_processprotein catabolic process
B0032496biological_processresponse to lipopolysaccharide
B0034599biological_processcellular response to oxidative stress
B0042177biological_processnegative regulation of protein catabolic process
B0042360biological_processvitamin E metabolic process
B0042373biological_processvitamin K metabolic process
B0042802molecular_functionidentical protein binding
B0045087biological_processinnate immune response
B0045202cellular_componentsynapse
B0045454biological_processcell redox homeostasis
B0050136molecular_functionNADH dehydrogenase (quinone) (non-electrogenic) activity
B0061771biological_processresponse to caloric restriction
B0110076biological_processnegative regulation of ferroptosis
C0000209biological_processprotein polyubiquitination
C0003723molecular_functionRNA binding
C0003955molecular_functionNAD(P)H dehydrogenase (quinone) activity
C0004128molecular_functioncytochrome-b5 reductase activity, acting on NAD(P)H
C0005515molecular_functionprotein binding
C0005634cellular_componentnucleus
C0005737cellular_componentcytoplasm
C0005829cellular_componentcytosol
C0006743biological_processubiquinone metabolic process
C0006805biological_processxenobiotic metabolic process
C0006809biological_processnitric oxide biosynthetic process
C0006979biological_processresponse to oxidative stress
C0007271biological_processsynaptic transmission, cholinergic
C0008753molecular_functionNADPH dehydrogenase (quinone) activity
C0009636biological_processresponse to toxic substance
C0016491molecular_functionoxidoreductase activity
C0019430biological_processremoval of superoxide radicals
C0030163biological_processprotein catabolic process
C0032496biological_processresponse to lipopolysaccharide
C0034599biological_processcellular response to oxidative stress
C0042177biological_processnegative regulation of protein catabolic process
C0042360biological_processvitamin E metabolic process
C0042373biological_processvitamin K metabolic process
C0042802molecular_functionidentical protein binding
C0045087biological_processinnate immune response
C0045202cellular_componentsynapse
C0045454biological_processcell redox homeostasis
C0050136molecular_functionNADH dehydrogenase (quinone) (non-electrogenic) activity
C0061771biological_processresponse to caloric restriction
C0110076biological_processnegative regulation of ferroptosis
D0000209biological_processprotein polyubiquitination
D0003723molecular_functionRNA binding
D0003955molecular_functionNAD(P)H dehydrogenase (quinone) activity
D0004128molecular_functioncytochrome-b5 reductase activity, acting on NAD(P)H
D0005515molecular_functionprotein binding
D0005634cellular_componentnucleus
D0005737cellular_componentcytoplasm
D0005829cellular_componentcytosol
D0006743biological_processubiquinone metabolic process
D0006805biological_processxenobiotic metabolic process
D0006809biological_processnitric oxide biosynthetic process
D0006979biological_processresponse to oxidative stress
D0007271biological_processsynaptic transmission, cholinergic
D0008753molecular_functionNADPH dehydrogenase (quinone) activity
D0009636biological_processresponse to toxic substance
D0016491molecular_functionoxidoreductase activity
D0019430biological_processremoval of superoxide radicals
D0030163biological_processprotein catabolic process
D0032496biological_processresponse to lipopolysaccharide
D0034599biological_processcellular response to oxidative stress
D0042177biological_processnegative regulation of protein catabolic process
D0042360biological_processvitamin E metabolic process
D0042373biological_processvitamin K metabolic process
D0042802molecular_functionidentical protein binding
D0045087biological_processinnate immune response
D0045202cellular_componentsynapse
D0045454biological_processcell redox homeostasis
D0050136molecular_functionNADH dehydrogenase (quinone) (non-electrogenic) activity
D0061771biological_processresponse to caloric restriction
D0110076biological_processnegative regulation of ferroptosis
E0000209biological_processprotein polyubiquitination
E0003723molecular_functionRNA binding
E0003955molecular_functionNAD(P)H dehydrogenase (quinone) activity
E0004128molecular_functioncytochrome-b5 reductase activity, acting on NAD(P)H
E0005515molecular_functionprotein binding
E0005634cellular_componentnucleus
E0005737cellular_componentcytoplasm
E0005829cellular_componentcytosol
E0006743biological_processubiquinone metabolic process
E0006805biological_processxenobiotic metabolic process
E0006809biological_processnitric oxide biosynthetic process
E0006979biological_processresponse to oxidative stress
E0007271biological_processsynaptic transmission, cholinergic
E0008753molecular_functionNADPH dehydrogenase (quinone) activity
E0009636biological_processresponse to toxic substance
E0016491molecular_functionoxidoreductase activity
E0019430biological_processremoval of superoxide radicals
E0030163biological_processprotein catabolic process
E0032496biological_processresponse to lipopolysaccharide
E0034599biological_processcellular response to oxidative stress
E0042177biological_processnegative regulation of protein catabolic process
E0042360biological_processvitamin E metabolic process
E0042373biological_processvitamin K metabolic process
E0042802molecular_functionidentical protein binding
E0045087biological_processinnate immune response
E0045202cellular_componentsynapse
E0045454biological_processcell redox homeostasis
E0050136molecular_functionNADH dehydrogenase (quinone) (non-electrogenic) activity
E0061771biological_processresponse to caloric restriction
E0110076biological_processnegative regulation of ferroptosis
F0000209biological_processprotein polyubiquitination
F0003723molecular_functionRNA binding
F0003955molecular_functionNAD(P)H dehydrogenase (quinone) activity
F0004128molecular_functioncytochrome-b5 reductase activity, acting on NAD(P)H
F0005515molecular_functionprotein binding
F0005634cellular_componentnucleus
F0005737cellular_componentcytoplasm
F0005829cellular_componentcytosol
F0006743biological_processubiquinone metabolic process
F0006805biological_processxenobiotic metabolic process
F0006809biological_processnitric oxide biosynthetic process
F0006979biological_processresponse to oxidative stress
F0007271biological_processsynaptic transmission, cholinergic
F0008753molecular_functionNADPH dehydrogenase (quinone) activity
F0009636biological_processresponse to toxic substance
F0016491molecular_functionoxidoreductase activity
F0019430biological_processremoval of superoxide radicals
F0030163biological_processprotein catabolic process
F0032496biological_processresponse to lipopolysaccharide
F0034599biological_processcellular response to oxidative stress
F0042177biological_processnegative regulation of protein catabolic process
F0042360biological_processvitamin E metabolic process
F0042373biological_processvitamin K metabolic process
F0042802molecular_functionidentical protein binding
F0045087biological_processinnate immune response
F0045202cellular_componentsynapse
F0045454biological_processcell redox homeostasis
F0050136molecular_functionNADH dehydrogenase (quinone) (non-electrogenic) activity
F0061771biological_processresponse to caloric restriction
F0110076biological_processnegative regulation of ferroptosis
G0000209biological_processprotein polyubiquitination
G0003723molecular_functionRNA binding
G0003955molecular_functionNAD(P)H dehydrogenase (quinone) activity
G0004128molecular_functioncytochrome-b5 reductase activity, acting on NAD(P)H
G0005515molecular_functionprotein binding
G0005634cellular_componentnucleus
G0005737cellular_componentcytoplasm
G0005829cellular_componentcytosol
G0006743biological_processubiquinone metabolic process
G0006805biological_processxenobiotic metabolic process
G0006809biological_processnitric oxide biosynthetic process
G0006979biological_processresponse to oxidative stress
G0007271biological_processsynaptic transmission, cholinergic
G0008753molecular_functionNADPH dehydrogenase (quinone) activity
G0009636biological_processresponse to toxic substance
G0016491molecular_functionoxidoreductase activity
G0019430biological_processremoval of superoxide radicals
G0030163biological_processprotein catabolic process
G0032496biological_processresponse to lipopolysaccharide
G0034599biological_processcellular response to oxidative stress
G0042177biological_processnegative regulation of protein catabolic process
G0042360biological_processvitamin E metabolic process
G0042373biological_processvitamin K metabolic process
G0042802molecular_functionidentical protein binding
G0045087biological_processinnate immune response
G0045202cellular_componentsynapse
G0045454biological_processcell redox homeostasis
G0050136molecular_functionNADH dehydrogenase (quinone) (non-electrogenic) activity
G0061771biological_processresponse to caloric restriction
G0110076biological_processnegative regulation of ferroptosis
H0000209biological_processprotein polyubiquitination
H0003723molecular_functionRNA binding
H0003955molecular_functionNAD(P)H dehydrogenase (quinone) activity
H0004128molecular_functioncytochrome-b5 reductase activity, acting on NAD(P)H
H0005515molecular_functionprotein binding
H0005634cellular_componentnucleus
H0005737cellular_componentcytoplasm
H0005829cellular_componentcytosol
H0006743biological_processubiquinone metabolic process
H0006805biological_processxenobiotic metabolic process
H0006809biological_processnitric oxide biosynthetic process
H0006979biological_processresponse to oxidative stress
H0007271biological_processsynaptic transmission, cholinergic
H0008753molecular_functionNADPH dehydrogenase (quinone) activity
H0009636biological_processresponse to toxic substance
H0016491molecular_functionoxidoreductase activity
H0019430biological_processremoval of superoxide radicals
H0030163biological_processprotein catabolic process
H0032496biological_processresponse to lipopolysaccharide
H0034599biological_processcellular response to oxidative stress
H0042177biological_processnegative regulation of protein catabolic process
H0042360biological_processvitamin E metabolic process
H0042373biological_processvitamin K metabolic process
H0042802molecular_functionidentical protein binding
H0045087biological_processinnate immune response
H0045202cellular_componentsynapse
H0045454biological_processcell redox homeostasis
H0050136molecular_functionNADH dehydrogenase (quinone) (non-electrogenic) activity
H0061771biological_processresponse to caloric restriction
H0110076biological_processnegative regulation of ferroptosis
Functional Information from PDB Data
site_idAC1
Number of Residues10
DetailsBINDING SITE FOR RESIDUE DTC A 2280
ChainResidue
ATYR126
CFAD2301
ATYR128
APHE178
APHE236
CTRP105
CGLY149
CGLY150
CMET154
CHIS161

site_idAC2
Number of Residues21
DetailsBINDING SITE FOR RESIDUE FAD A 301
ChainResidue
AHIS11
ATHR15
ASER16
APHE17
AASN18
AALA20
APRO102
ALEU103
AGLN104
ATRP105
APHE106
ATHR147
ATHR148
AGLY149
AGLY150
ATYR155
AILE192
AARG200
ALEU204
CGLN66
CDTC280

site_idAC3
Number of Residues11
DetailsBINDING SITE FOR RESIDUE DTC B 3280
ChainResidue
BTYR126
BTYR128
BPHE178
BPHE232
BPHE236
DPHE106
DGLY149
DGLY150
DMET154
DHIS161
DFAD3301

site_idAC4
Number of Residues24
DetailsBINDING SITE FOR RESIDUE FAD B 1301
ChainResidue
BHIS11
BTHR15
BSER16
BPHE17
BASN18
BALA20
BPRO102
BLEU103
BGLN104
BTRP105
BPHE106
BTHR147
BTHR148
BGLY149
BGLY150
BTYR155
BARG200
BLEU204
BHOH7390
BHOH7407
DGLN66
DPRO68
DDTC1280
HASN64

site_idAC5
Number of Residues11
DetailsBINDING SITE FOR RESIDUE DTC C 280
ChainResidue
ATRP105
APHE106
AGLY149
AGLY150
AMET154
AHIS161
AFAD301
CTYR126
CTYR128
CPHE178
CPHE236

site_idAC6
Number of Residues21
DetailsBINDING SITE FOR RESIDUE FAD C 2301
ChainResidue
AGLN66
APRO68
ADTC2280
CHIS11
CTHR15
CSER16
CPHE17
CASN18
CALA20
CPRO102
CLEU103
CGLN104
CTRP105
CPHE106
CTHR147
CTHR148
CGLY149
CGLY150
CTYR155
CILE192
CARG200

site_idAC7
Number of Residues10
DetailsBINDING SITE FOR RESIDUE DTC D 1280
ChainResidue
BGLY149
BGLY150
BMET154
BHIS161
BFAD1301
DTYR128
DMET131
DPHE178
DPHE236
BTRP105

site_idAC8
Number of Residues22
DetailsBINDING SITE FOR RESIDUE FAD D 3301
ChainResidue
BGLN66
BPRO68
BDTC3280
DHIS11
DTHR15
DSER16
DPHE17
DASN18
DALA20
DPRO102
DLEU103
DGLN104
DTRP105
DPHE106
DTHR147
DTHR148
DGLY149
DGLY150
DTYR155
DILE192
DARG200
DLEU204

site_idAC9
Number of Residues12
DetailsBINDING SITE FOR RESIDUE DTC E 4280
ChainResidue
ETRP105
EPHE106
EGLY149
EGLY150
EMET154
EHIS161
EFAD4301
FTYR126
FTYR128
FMET131
FPHE178
FPHE236

site_idBC1
Number of Residues10
DetailsBINDING SITE FOR RESIDUE DTC E 5280
ChainResidue
ETYR126
ETYR128
EPHE178
EPHE236
FTRP105
FGLY149
FGLY150
FMET154
FHIS161
FFAD5301

site_idBC2
Number of Residues21
DetailsBINDING SITE FOR RESIDUE FAD E 4301
ChainResidue
EHIS11
ETHR15
ESER16
EPHE17
EASN18
EALA20
EPRO102
ELEU103
EGLN104
ETRP105
EPHE106
ETHR147
ETHR148
EGLY149
EGLY150
ETYR155
EILE192
EARG200
ELEU204
EDTC4280
FGLN66

site_idBC3
Number of Residues22
DetailsBINDING SITE FOR RESIDUE FAD F 5301
ChainResidue
EGLN66
ETYR67
EDTC5280
FHIS11
FTHR15
FSER16
FPHE17
FASN18
FALA20
FPRO102
FLEU103
FGLN104
FTRP105
FPHE106
FTHR147
FTHR148
FGLY149
FGLY150
FTYR155
FILE192
FARG200
FLEU204

site_idBC4
Number of Residues12
DetailsBINDING SITE FOR RESIDUE DTC G 7280
ChainResidue
GTYR126
GTYR128
GMET131
GPHE178
GPHE232
GPHE236
HTRP105
HGLY149
HGLY150
HMET154
HHIS161
HFAD7301

site_idBC5
Number of Residues23
DetailsBINDING SITE FOR RESIDUE FAD G 6301
ChainResidue
DASN64
GHIS11
GTHR15
GSER16
GPHE17
GASN18
GALA20
GPRO102
GLEU103
GGLN104
GTRP105
GPHE106
GTHR147
GTHR148
GGLY149
GGLY150
GTYR155
GILE192
GARG200
GLEU204
HGLN66
HPRO68
HDTC6280

site_idBC6
Number of Residues11
DetailsBINDING SITE FOR RESIDUE DTC H 6280
ChainResidue
GTRP105
GGLY149
GGLY150
GMET154
GHIS161
GFAD6301
HTYR126
HTYR128
HPHE178
HPHE232
HPHE236

site_idBC7
Number of Residues22
DetailsBINDING SITE FOR RESIDUE FAD H 7301
ChainResidue
GGLN66
GPRO68
GDTC7280
HHIS11
HTHR15
HSER16
HPHE17
HASN18
HALA20
HPRO102
HLEU103
HGLN104
HTRP105
HPHE106
HTHR147
HTHR148
HGLY149
HGLY150
HTYR155
HILE192
HARG200
HLEU204

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues56
DetailsBINDING: BINDING => ECO:0000269|PubMed:10543876, ECO:0000269|PubMed:10706635, ECO:0000269|PubMed:11735396
ChainResidueDetails
AHIS11
BGLN66
BLEU103
BTHR147
BTYR155
BARG200
CHIS11
CPHE17
CGLN66
CLEU103
CTHR147
APHE17
CTYR155
CARG200
DHIS11
DPHE17
DGLN66
DLEU103
DTHR147
DTYR155
DARG200
EHIS11
AGLN66
EPHE17
EGLN66
ELEU103
ETHR147
ETYR155
EARG200
FHIS11
FPHE17
FGLN66
FLEU103
ALEU103
FTHR147
FTYR155
FARG200
GHIS11
GPHE17
GGLN66
GLEU103
GTHR147
GTYR155
GARG200
ATHR147
HHIS11
HPHE17
HGLN66
HLEU103
HTHR147
HTYR155
HARG200
ATYR155
AARG200
BHIS11
BPHE17

site_idSWS_FT_FI2
Number of Residues8
DetailsBINDING:
ChainResidueDetails
AALA125
BALA125
CALA125
DALA125
EALA125
FALA125
GALA125
HALA125

site_idSWS_FT_FI3
Number of Residues8
DetailsMOD_RES: Phosphoserine => ECO:0007744|PubMed:23186163
ChainResidueDetails
ASER81
BSER81
CSER81
DSER81
ESER81
FSER81
GSER81
HSER81

site_idSWS_FT_FI4
Number of Residues24
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2) => ECO:0007744|PubMed:28112733
ChainResidueDetails
ALYS249
DLYS249
DLYS250
ELYS249
ELYS250
FLYS249
FLYS250
GLYS249
GLYS250
HLYS249
HLYS250
ALYS250
BLYS249
BLYS250
CLYS249
CLYS250

Catalytic Information from CSA
site_idCSA1
Number of Residues3
DetailsAnnotated By Reference To The Literature 1d4a
ChainResidueDetails
ATYR155
AHIS161
AGLY149

site_idCSA2
Number of Residues3
DetailsAnnotated By Reference To The Literature 1d4a
ChainResidueDetails
BTYR155
BHIS161
BGLY149

site_idCSA3
Number of Residues3
DetailsAnnotated By Reference To The Literature 1d4a
ChainResidueDetails
CTYR155
CHIS161
CGLY149

site_idCSA4
Number of Residues3
DetailsAnnotated By Reference To The Literature 1d4a
ChainResidueDetails
DTYR155
DHIS161
DGLY149

site_idCSA5
Number of Residues3
DetailsAnnotated By Reference To The Literature 1d4a
ChainResidueDetails
ETYR155
EHIS161
EGLY149

site_idCSA6
Number of Residues3
DetailsAnnotated By Reference To The Literature 1d4a
ChainResidueDetails
FTYR155
FHIS161
FGLY149

site_idCSA7
Number of Residues3
DetailsAnnotated By Reference To The Literature 1d4a
ChainResidueDetails
GTYR155
GHIS161
GGLY149

site_idCSA8
Number of Residues3
DetailsAnnotated By Reference To The Literature 1d4a
ChainResidueDetails
HTYR155
HHIS161
HGLY149

site_idMCSA1
Number of Residues3
DetailsM-CSA 3
ChainResidueDetails
AGLY149electrostatic stabiliser, hydrogen bond donor
ATYR155electrostatic stabiliser, hydrogen bond acceptor, hydrogen bond donor, proton acceptor, proton donor, proton relay
AHIS161hydrogen bond acceptor, hydrogen bond donor, proton acceptor, proton donor, proton relay

site_idMCSA2
Number of Residues3
DetailsM-CSA 3
ChainResidueDetails
BGLY149electrostatic stabiliser, hydrogen bond donor
BTYR155electrostatic stabiliser, hydrogen bond acceptor, hydrogen bond donor, proton acceptor, proton donor, proton relay
BHIS161hydrogen bond acceptor, hydrogen bond donor, proton acceptor, proton donor, proton relay

site_idMCSA3
Number of Residues3
DetailsM-CSA 3
ChainResidueDetails
CGLY149electrostatic stabiliser, hydrogen bond donor
CTYR155electrostatic stabiliser, hydrogen bond acceptor, hydrogen bond donor, proton acceptor, proton donor, proton relay
CHIS161hydrogen bond acceptor, hydrogen bond donor, proton acceptor, proton donor, proton relay

site_idMCSA4
Number of Residues3
DetailsM-CSA 3
ChainResidueDetails
DGLY149electrostatic stabiliser, hydrogen bond donor
DTYR155electrostatic stabiliser, hydrogen bond acceptor, hydrogen bond donor, proton acceptor, proton donor, proton relay
DHIS161hydrogen bond acceptor, hydrogen bond donor, proton acceptor, proton donor, proton relay

site_idMCSA5
Number of Residues3
DetailsM-CSA 3
ChainResidueDetails
EGLY149electrostatic stabiliser, hydrogen bond donor
ETYR155electrostatic stabiliser, hydrogen bond acceptor, hydrogen bond donor, proton acceptor, proton donor, proton relay
EHIS161hydrogen bond acceptor, hydrogen bond donor, proton acceptor, proton donor, proton relay

site_idMCSA6
Number of Residues3
DetailsM-CSA 3
ChainResidueDetails
FGLY149electrostatic stabiliser, hydrogen bond donor
FTYR155electrostatic stabiliser, hydrogen bond acceptor, hydrogen bond donor, proton acceptor, proton donor, proton relay
FHIS161hydrogen bond acceptor, hydrogen bond donor, proton acceptor, proton donor, proton relay

site_idMCSA7
Number of Residues3
DetailsM-CSA 3
ChainResidueDetails
GGLY149electrostatic stabiliser, hydrogen bond donor
GTYR155electrostatic stabiliser, hydrogen bond acceptor, hydrogen bond donor, proton acceptor, proton donor, proton relay
GHIS161hydrogen bond acceptor, hydrogen bond donor, proton acceptor, proton donor, proton relay

site_idMCSA8
Number of Residues3
DetailsM-CSA 3
ChainResidueDetails
HGLY149electrostatic stabiliser, hydrogen bond donor
HTYR155electrostatic stabiliser, hydrogen bond acceptor, hydrogen bond donor, proton acceptor, proton donor, proton relay
HHIS161hydrogen bond acceptor, hydrogen bond donor, proton acceptor, proton donor, proton relay

237735

PDB entries from 2025-06-18

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