English 日本語简体中文繁體中文 한국어

✖

Menu

RCSB PDB PDBe BMRB Adv. Search Search help

Summary Structural details Experimental details Functional details Sequence Neighbor History Downloads

2EFU

The crystal structure of D-amino acid amidase from Ochrobactrum anthropi SV3 complexed with L-phenylalanine

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0006508	biological_process	proteolysis
A	0008233	molecular_function	peptidase activity
B	0006508	biological_process	proteolysis
B	0008233	molecular_function	peptidase activity
C	0006508	biological_process	proteolysis
C	0008233	molecular_function	peptidase activity
D	0006508	biological_process	proteolysis
D	0008233	molecular_function	peptidase activity
E	0006508	biological_process	proteolysis
E	0008233	molecular_function	peptidase activity
F	0006508	biological_process	proteolysis
F	0008233	molecular_function	peptidase activity

Functional Information from PDB Data

site_id	AC1
Number of Residues	6
Details	BINDING SITE FOR RESIDUE BA A 3003

Chain	Residue
A	SER121
A	ASP122
A	GLU232
A	TRP233
A	HOH3048
A	HOH3149

site_id	AC2
Number of Residues	4
Details	BINDING SITE FOR RESIDUE BA A 3004

Chain	Residue
D	HOH3243
A	GLU211
A	HOH3031
D	HOH3189

site_id	AC3
Number of Residues	4
Details	BINDING SITE FOR RESIDUE BA A 3009

Chain	Residue
A	SER301
A	GLU323
B	GLU323
B	BA3010

site_id	AC4
Number of Residues	2
Details	BINDING SITE FOR RESIDUE BA A 3020

Chain	Residue
A	ASN360
A	SER363

site_id	AC5
Number of Residues	7
Details	BINDING SITE FOR RESIDUE BA B 3002

Chain	Residue
B	SER121
B	ASP122
B	GLU232
B	TRP233
B	HOH3020
B	HOH3098
B	HOH3127

site_id	AC6
Number of Residues	5
Details	BINDING SITE FOR RESIDUE BA B 3010

Chain	Residue
A	BA3009
B	SER301
B	GLU323
F	BA3008
F	HOH3064

site_id	AC7
Number of Residues	7
Details	BINDING SITE FOR RESIDUE BA C 3001

Chain	Residue
C	SER121
C	ASP122
C	GLU232
C	TRP233
C	HOH3068
C	HOH3105
C	HOH3124

site_id	AC8
Number of Residues	5
Details	BINDING SITE FOR RESIDUE BA C 3005

Chain	Residue
B	HOH3095
B	HOH3275
C	ALA206
C	ALA208
C	HOH3259

site_id	AC9
Number of Residues	3
Details	BINDING SITE FOR RESIDUE BA C 3011

Chain	Residue
C	SER301
C	GLU323
D	HOH3135

site_id	BC1
Number of Residues	2
Details	BINDING SITE FOR RESIDUE BA C 3013

Chain	Residue
C	HOH3169
D	HOH3135

site_id	BC2
Number of Residues	5
Details	BINDING SITE FOR RESIDUE BA D 3014

Chain	Residue
D	SER301
D	GLU323
D	HOH3135
E	BA3012
E	HOH3033

site_id	BC3
Number of Residues	2
Details	BINDING SITE FOR RESIDUE BA D 3015

Chain	Residue
D	ASN286
D	HOH3233

site_id	BC4
Number of Residues	3
Details	BINDING SITE FOR RESIDUE BA D 3017

Chain	Residue
D	ASP122
D	GLU232
D	HOH3251

site_id	BC5
Number of Residues	4
Details	BINDING SITE FOR RESIDUE BA D 3022

Chain	Residue
D	ASN360
D	SER363
D	HOH3219
E	SER363

site_id	BC6
Number of Residues	4
Details	BINDING SITE FOR RESIDUE BA D 3023

Chain	Residue
D	GLU114
D	THR115
D	MET117
D	PHE2004

site_id	BC7
Number of Residues	5
Details	BINDING SITE FOR RESIDUE BA E 3012

Chain	Residue
D	BA3014
E	SER301
E	GLU323
E	HOH3180
E	HOH3188

site_id	BC8
Number of Residues	3
Details	BINDING SITE FOR RESIDUE BA E 3018

Chain	Residue
E	ASP122
E	GLU232
E	HOH3102

site_id	BC9
Number of Residues	2
Details	BINDING SITE FOR RESIDUE BA E 3019

Chain	Residue
E	ASN360
E	SER363

site_id	CC1
Number of Residues	4
Details	BINDING SITE FOR RESIDUE BA E 3024

Chain	Residue
E	GLU114
E	MET117
E	HOH3220
E	HOH3221

site_id	CC2
Number of Residues	1
Details	BINDING SITE FOR RESIDUE BA F 3006

Chain	Residue
F	ALA17

site_id	CC3
Number of Residues	1
Details	BINDING SITE FOR RESIDUE BA F 3007

Chain	Residue
A	HOH3195

site_id	CC4
Number of Residues	5
Details	BINDING SITE FOR RESIDUE BA F 3008

Chain	Residue
A	HOH3195
B	BA3010
F	SER301
F	GLU323
F	HOH3064

site_id	CC5
Number of Residues	7
Details	BINDING SITE FOR RESIDUE BA F 3016

Chain	Residue
F	SER121
F	ASP122
F	GLU232
F	TRP233
F	HOH3029
F	HOH3052
F	HOH3140

site_id	CC6
Number of Residues	4
Details	BINDING SITE FOR RESIDUE BA F 3025

Chain	Residue
F	GLU114
F	THR115
F	MET117
F	PHE2006

site_id	CC7
Number of Residues	10
Details	BINDING SITE FOR RESIDUE PHE A 2001

Chain	Residue
A	TYR149
A	ASN151
A	PHE234
A	GLY309
A	GLN310
A	HOH3068
A	ALA59
A	SER60
A	PHE113
A	GLU114

site_id	CC8
Number of Residues	9
Details	BINDING SITE FOR RESIDUE PHE B 2002

Chain	Residue
B	ALA59
B	SER60
B	PHE113
B	GLU114
B	TYR149
B	ASN151
B	PHE234
B	GLY309
B	GLN310

site_id	CC9
Number of Residues	9
Details	BINDING SITE FOR RESIDUE PHE C 2003

Chain	Residue
C	ALA59
C	SER60
C	GLU114
C	TYR149
C	ASN151
C	PHE234
C	GLY309
C	GLN310
C	HOH3115

site_id	DC1
Number of Residues	8
Details	BINDING SITE FOR RESIDUE PHE D 2004

Chain	Residue
D	PHE113
D	GLU114
D	ASN151
D	ALA242
D	GLN310
D	PRO312
D	BA3023
D	HOH3276

site_id	DC2
Number of Residues	8
Details	BINDING SITE FOR RESIDUE PHE E 2005

Chain	Residue
E	PHE113
E	GLU114
E	ASN151
E	ALA242
E	GLN310
E	PRO312
E	HOH3181
E	HOH3222

site_id	DC3
Number of Residues	7
Details	BINDING SITE FOR RESIDUE PHE F 2006

Chain	Residue
F	PHE113
F	ASN151
F	PHE234
F	ALA239
F	GLN310
F	PRO312
F	BA3025

Catalytic Information from CSA

site_id	CSA1
Number of Residues	5
Details	Annotated By Reference To The Literature 1ei5

Chain	Residue	Details
A	SER60
A	ASN151
A	TYR149
A	LYS63
A	HIS307

site_id	CSA2
Number of Residues	5
Details	Annotated By Reference To The Literature 1ei5

Chain	Residue	Details
B	SER60
B	ASN151
B	TYR149
B	LYS63
B	HIS307

site_id	CSA3
Number of Residues	5
Details	Annotated By Reference To The Literature 1ei5

Chain	Residue	Details
C	SER60
C	ASN151
C	TYR149
C	LYS63
C	HIS307

site_id	CSA4
Number of Residues	5
Details	Annotated By Reference To The Literature 1ei5

Chain	Residue	Details
D	SER60
D	ASN151
D	TYR149
D	LYS63
D	HIS307

site_id	CSA5
Number of Residues	5
Details	Annotated By Reference To The Literature 1ei5

Chain	Residue	Details
E	SER60
E	ASN151
E	TYR149
E	LYS63
E	HIS307

site_id	CSA6
Number of Residues	5
Details	Annotated By Reference To The Literature 1ei5

Chain	Residue	Details
F	SER60
F	ASN151
F	TYR149
F	LYS63
F	HIS307

219140

PDB entries from 2024-05-01

PDB statistics

PDBj update info

Contact PDBj

numon