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2EAB

Crystal structure of 1,2-a-L-fucosidase from Bifidobacterium bifidum (apo form)

Functional Information from GO Data
ChainGOidnamespacecontents
A0004560molecular_functionalpha-L-fucosidase activity
A0005975biological_processcarbohydrate metabolic process
B0004560molecular_functionalpha-L-fucosidase activity
B0005975biological_processcarbohydrate metabolic process
Functional Information from PDB Data
site_idAC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CA B 899
ChainResidue
BGLY56
BGLU76
BSER385
BLEU392
BILE399
BHOH5044

site_idAC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CA A 899
ChainResidue
ALEU392
AILE399
AHOH5069
AGLY56
AGLU76
ASER385

site_idAC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO B 4801
ChainResidue
BHIS419
BEDO4802
BHOH5076
BHOH5450
BHOH5554
BHOH6448

site_idAC4
Number of Residues7
DetailsBINDING SITE FOR RESIDUE EDO B 4802
ChainResidue
BTRP414
BASN423
BHIS760
BGLN764
BASP766
BEDO4801
BHOH5039

site_idAC5
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO B 4803
ChainResidue
BASN421
BPRO565
BHIS678
BSER680
BHOH5098
BHOH5450

site_idAC6
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO A 4804
ChainResidue
AASN421
ATRP509
AHIS678
ASER680
AHOH5067
AHOH5437

site_idAC7
Number of Residues10
DetailsBINDING SITE FOR RESIDUE EDO A 4805
ChainResidue
AHIS419
AVAL422
AASN423
ATHR484
AHIS678
AEDO4806
AHOH5046
AHOH5437
AHOH5625
AHOH6558

site_idAC8
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO A 4806
ChainResidue
ATRP414
AASN423
AGLN764
AASP766
AEDO4805
AHOH5056

site_idAC9
Number of Residues7
DetailsBINDING SITE FOR RESIDUE EDO A 4807
ChainResidue
ATRP429
AGLU516
ATYR520
APHE686
AARG733
AGLU777
AARG819

site_idBC1
Number of Residues8
DetailsBINDING SITE FOR RESIDUE EDO B 4808
ChainResidue
BTRP429
BGLU516
BTYR520
BARG733
BGLU777
BARG819
BHOH5021
BHOH5049

site_idBC2
Number of Residues8
DetailsBINDING SITE FOR RESIDUE EDO B 4809
ChainResidue
BGLN285
BLYS286
BTYR287
BGLY449
BPRO453
BHOH5046
BHOH5485
BHOH5584

site_idBC3
Number of Residues9
DetailsBINDING SITE FOR RESIDUE EDO A 4810
ChainResidue
AGLN285
ALYS286
ATYR287
AGLY449
APRO453
AHOH5036
AHOH5337
AHOH5443
AHOH6315

site_idBC4
Number of Residues7
DetailsBINDING SITE FOR RESIDUE EDO B 4811
ChainResidue
BTYR518
BGLU519
BGLY522
BGLY820
BHOH5123
BHOH5220
BHOH5347

site_idBC5
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO A 4812
ChainResidue
ATYR518
AGLU519
AGLY522
AGLY820
AHOH5175
AHOH5231

site_idBC6
Number of Residues13
DetailsBINDING SITE FOR RESIDUE TRS A 5001
ChainResidue
AGLN584
AASN587
AASP588
AGLU591
AASP689
AVAL795
AASN796
ATRS5002
AHOH5184
AHOH5244
AHOH5431
AHOH5461
AGLU519

site_idBC7
Number of Residues12
DetailsBINDING SITE FOR RESIDUE TRS A 5002
ChainResidue
AGLN512
AGLU516
AGLU519
AGLN584
AASP588
APRO687
AGLY688
AASP689
AASN783
ATRS5001
AHOH5055
AHOH5256

site_idBC8
Number of Residues13
DetailsBINDING SITE FOR RESIDUE TRS B 5003
ChainResidue
BGLU519
BGLN584
BASN587
BASP588
BGLU591
BASP689
BVAL795
BASN796
BTRS5004
BHOH5207
BHOH5299
BHOH5347
BHOH5447

site_idBC9
Number of Residues12
DetailsBINDING SITE FOR RESIDUE TRS B 5004
ChainResidue
BGLN512
BGLU516
BGLU519
BGLN584
BASP588
BPRO687
BGLY688
BASP689
BASN783
BTRS5003
BHOH5062
BHOH5440

Catalytic Information from CSA
site_idCSA1
Number of Residues1
DetailsAnnotated By Reference To The Literature 1h54
ChainResidueDetails
AGLN567

site_idCSA2
Number of Residues1
DetailsAnnotated By Reference To The Literature 1h54
ChainResidueDetails
BGLN567

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PDB entries from 2024-10-16

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