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2E6Y

Covalent complex of orotidine 5'-monophosphate decarboxylase (ODCase) with 6-Iodo-UMP

Functional Information from GO Data
ChainGOidnamespacecontents
A0004590molecular_functionorotidine-5'-phosphate decarboxylase activity
A0005829cellular_componentcytosol
A0006207biological_process'de novo' pyrimidine nucleobase biosynthetic process
A0006221biological_processpyrimidine nucleotide biosynthetic process
A0016831molecular_functioncarboxy-lyase activity
A0044205biological_process'de novo' UMP biosynthetic process
B0004590molecular_functionorotidine-5'-phosphate decarboxylase activity
B0005829cellular_componentcytosol
B0006207biological_process'de novo' pyrimidine nucleobase biosynthetic process
B0006221biological_processpyrimidine nucleotide biosynthetic process
B0016831molecular_functioncarboxy-lyase activity
B0044205biological_process'de novo' UMP biosynthetic process
Functional Information from PDB Data
site_idAC1
Number of Residues18
DetailsBINDING SITE FOR RESIDUE U5P A 301
ChainResidue
AASP20
AHOH402
AHOH403
AHOH406
AHOH407
AHOH408
AHOH411
BASP1075
BILE1076
BTHR1079
ALYS42
ALYS72
AMET126
ASER127
APRO180
AGLN185
AGLY202
AARG203

site_idAC2
Number of Residues19
DetailsBINDING SITE FOR RESIDUE U5P B 302
ChainResidue
AASP75
AILE76
ATHR79
AHOH607
BHOH422
BHOH423
BHOH426
BHOH427
BHOH428
BHOH431
BASP1020
BLYS1042
BLYS1072
BMET1126
BSER1127
BPRO1180
BGLN1185
BGLY1202
BARG1203

site_idAC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GOL A 311
ChainResidue
AASN210
AHOH536
AHOH539
BTHR1159
BPRO1161
BGLY1186

site_idAC4
Number of Residues7
DetailsBINDING SITE FOR RESIDUE GOL A 312
ChainResidue
ATHR159
APRO161
AGLY186
BHOH535
BHOH540
BHOH769
BASN1210

site_idAC5
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GOL B 313
ChainResidue
AGLU162
BALA1208
BASP1209
BASN1210
BALA1213
BALA1214

site_idAC6
Number of Residues5
DetailsBINDING SITE FOR RESIDUE GOL A 314
ChainResidue
AALA208
AASP209
AASN210
AALA213
AALA214

Functional Information from PROSITE/UniProt
site_idPS00156
Number of Residues14
DetailsOMPDECASE Orotidine 5'-phosphate decarboxylase active site. IIaDfKvaDIPeTN
ChainResidueDetails
AILE67-ASN80

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsACT_SITE: Proton donor
ChainResidueDetails
ALYS72
BLYS1072

site_idSWS_FT_FI2
Number of Residues14
DetailsBINDING:
ChainResidueDetails
AASP20
BASP1070
BSER1127
BPRO1180
BGLY1202
BARG1203
ALYS42
AASP70
ASER127
APRO180
AGLY202
AARG203
BASP1020
BLYS1042

Catalytic Information from CSA
site_idCSA1
Number of Residues2
DetailsAnnotated By Reference To The Literature 1dbt
ChainResidueDetails
ALYS72
AASP70

site_idCSA2
Number of Residues2
DetailsAnnotated By Reference To The Literature 1dbt
ChainResidueDetails
BASP1070
BLYS1072

site_idCSA3
Number of Residues4
DetailsAnnotated By Reference To The Literature 1dbt
ChainResidueDetails
ALYS42
AASP75
ALYS72
AASP70

site_idCSA4
Number of Residues4
DetailsAnnotated By Reference To The Literature 1dbt
ChainResidueDetails
BASP1070
BASP1075
BLYS1072
BLYS1042

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PDB entries from 2024-07-31

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