English 日本語简体中文繁體中文 한국어

✖

Menu

RCSB PDB PDBe BMRB Adv. Search Search help

Summary Structural details Experimental details Functional details Sequence Neighbor History Downloads

2DNS

The crystal structure of D-amino acid amidase from Ochrobactrum anthropi SV3 complexed with D-Phenylalanine

Replaces: 2DD0

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0006508	biological_process	proteolysis
A	0008233	molecular_function	peptidase activity
B	0006508	biological_process	proteolysis
B	0008233	molecular_function	peptidase activity
C	0006508	biological_process	proteolysis
C	0008233	molecular_function	peptidase activity
D	0006508	biological_process	proteolysis
D	0008233	molecular_function	peptidase activity
E	0006508	biological_process	proteolysis
E	0008233	molecular_function	peptidase activity
F	0006508	biological_process	proteolysis
F	0008233	molecular_function	peptidase activity

Functional Information from PDB Data

site_id	AC1
Number of Residues	7
Details	BINDING SITE FOR RESIDUE BA C 3001

Chain	Residue
C	SER121
C	ASP122
C	GLU232
C	TRP233
C	HOH3122
C	HOH3156
C	HOH3161

site_id	AC2
Number of Residues	8
Details	BINDING SITE FOR RESIDUE BA B 3002

Chain	Residue
B	GLU232
B	TRP233
B	HOH3059
B	HOH3068
B	HOH3095
B	HOH3103
B	SER121
B	ASP122

site_id	AC3
Number of Residues	6
Details	BINDING SITE FOR RESIDUE BA A 3003

Chain	Residue
A	SER121
A	ASP122
A	GLU232
A	TRP233
A	HOH3023
A	HOH3071

site_id	AC4
Number of Residues	2
Details	BINDING SITE FOR RESIDUE BA A 3004

Chain	Residue
A	GLU211
A	HOH3059

site_id	AC5
Number of Residues	3
Details	BINDING SITE FOR RESIDUE BA C 3005

Chain	Residue
C	ALA206
C	ALA208
C	HOH3046

site_id	AC6
Number of Residues	1
Details	BINDING SITE FOR RESIDUE BA F 3006

Chain	Residue
F	ALA17

site_id	AC7
Number of Residues	1
Details	BINDING SITE FOR RESIDUE BA A 3007

Chain	Residue
F	BA3008

site_id	AC8
Number of Residues	6
Details	BINDING SITE FOR RESIDUE BA F 3008

Chain	Residue
A	GLU323
A	BA3007
A	BA3020
B	BA3019
F	SER301
F	GLU323

site_id	AC9
Number of Residues	5
Details	BINDING SITE FOR RESIDUE BA C 3009

Chain	Residue
C	SER301
C	GLU323
C	BA3011
D	GLU323
D	BA3012

site_id	BC1
Number of Residues	3
Details	BINDING SITE FOR RESIDUE BA E 3010

Chain	Residue
C	BA3011
D	BA3012
E	GLU323

site_id	BC2
Number of Residues	2
Details	BINDING SITE FOR RESIDUE BA C 3011

Chain	Residue
C	BA3009
E	BA3010

site_id	BC3
Number of Residues	4
Details	BINDING SITE FOR RESIDUE BA D 3012

Chain	Residue
C	BA3009
D	SER301
D	GLU323
E	BA3010

site_id	BC4
Number of Residues	1
Details	BINDING SITE FOR RESIDUE BA D 3013

Chain	Residue
D	ASN286

site_id	BC5
Number of Residues	6
Details	BINDING SITE FOR RESIDUE BA F 3014

Chain	Residue
F	SER121
F	ASP122
F	GLU232
F	TRP233
F	HOH3022
F	HOH3044

site_id	BC6
Number of Residues	5
Details	BINDING SITE FOR RESIDUE BA D 3015

Chain	Residue
D	SER121
D	ASP122
D	GLU232
D	TRP233
D	HOH3137

site_id	BC7
Number of Residues	6
Details	BINDING SITE FOR RESIDUE BA E 3016

Chain	Residue
E	SER121
E	ASP122
E	GLU232
E	TRP233
E	HOH3051
E	HOH3062

site_id	BC8
Number of Residues	2
Details	BINDING SITE FOR RESIDUE BA D 3017

Chain	Residue
D	ASN360
D	ARG362

site_id	BC9
Number of Residues	2
Details	BINDING SITE FOR RESIDUE BA A 3018

Chain	Residue
A	ASN360
A	SER363

site_id	CC1
Number of Residues	4
Details	BINDING SITE FOR RESIDUE BA B 3019

Chain	Residue
A	BA3020
B	SER301
B	GLU323
F	BA3008

site_id	CC2
Number of Residues	5
Details	BINDING SITE FOR RESIDUE BA A 3020

Chain	Residue
A	SER301
A	GLU323
B	GLU323
B	BA3019
F	BA3008

site_id	CC3
Number of Residues	10
Details	BINDING SITE FOR RESIDUE DPN A 1060

Chain	Residue
A	ALA59
A	SER60
A	PHE113
A	GLU114
A	PHE234
A	ALA242
A	GLY309
A	GLN310
A	HOH3027
A	HOH3043

site_id	CC4
Number of Residues	9
Details	BINDING SITE FOR RESIDUE DPN B 1060

Chain	Residue
B	ALA59
B	SER60
B	PHE113
B	GLU114
B	ASN151
B	PHE234
B	GLY309
B	GLN310
B	HOH3079

site_id	CC5
Number of Residues	6
Details	BINDING SITE FOR RESIDUE DPN C 1060

Chain	Residue
C	PHE113
C	GLU114
C	GLY309
C	GLN310
C	HOH3074
C	SER60

site_id	CC6
Number of Residues	9
Details	BINDING SITE FOR RESIDUE DPN D 1060

Chain	Residue
D	ALA59
D	SER60
D	PHE113
D	GLU114
D	MET119
D	ASN151
D	PHE234
D	GLY309
D	GLN310

site_id	CC7
Number of Residues	5
Details	BINDING SITE FOR RESIDUE DPN E 1060

Chain	Residue
E	SER60
E	GLU114
E	ASN151
E	GLY309
E	GLN310

Catalytic Information from CSA

site_id	CSA1
Number of Residues	5
Details	Annotated By Reference To The Literature 1ei5

Chain	Residue	Details
A	SER60
A	ASN151
A	TYR149
A	LYS63
A	HIS307

site_id	CSA2
Number of Residues	5
Details	Annotated By Reference To The Literature 1ei5

Chain	Residue	Details
B	SER60
B	ASN151
B	TYR149
B	LYS63
B	HIS307

site_id	CSA3
Number of Residues	5
Details	Annotated By Reference To The Literature 1ei5

Chain	Residue	Details
C	SER60
C	ASN151
C	TYR149
C	LYS63
C	HIS307

site_id	CSA4
Number of Residues	5
Details	Annotated By Reference To The Literature 1ei5

Chain	Residue	Details
D	SER60
D	ASN151
D	TYR149
D	LYS63
D	HIS307

site_id	CSA5
Number of Residues	5
Details	Annotated By Reference To The Literature 1ei5

Chain	Residue	Details
E	SER60
E	ASN151
E	TYR149
E	LYS63
E	HIS307

site_id	CSA6
Number of Residues	5
Details	Annotated By Reference To The Literature 1ei5

Chain	Residue	Details
F	SER60
F	ASN151
F	TYR149
F	LYS63
F	HIS307

226707

PDB entries from 2024-10-30

PDB statistics

PDBj update info

Contact PDBj

numon