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2DER

Cocrystal structure of an RNA sulfuration enzyme MnmA and tRNA-Glu in the initial tRNA binding state

Functional Information from GO Data
ChainGOidnamespacecontents
A0000049molecular_functiontRNA binding
A0002143biological_processtRNA wobble position uridine thiolation
A0005524molecular_functionATP binding
A0005737cellular_componentcytoplasm
A0005829cellular_componentcytosol
A0006400biological_processtRNA modification
A0008033biological_processtRNA processing
A0016740molecular_functiontransferase activity
A0016783molecular_functionsulfurtransferase activity
A0103016molecular_functiontRNA-uridine 2-sulfurtransferase activity
A1990228cellular_componentsulfurtransferase complex
B0000049molecular_functiontRNA binding
B0002143biological_processtRNA wobble position uridine thiolation
B0005524molecular_functionATP binding
B0005737cellular_componentcytoplasm
B0005829cellular_componentcytosol
B0006400biological_processtRNA modification
B0008033biological_processtRNA processing
B0016740molecular_functiontransferase activity
B0016783molecular_functionsulfurtransferase activity
B0103016molecular_functiontRNA-uridine 2-sulfurtransferase activity
B1990228cellular_componentsulfurtransferase complex
Functional Information from PDB Data
site_idAC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE PO4 B 1001
ChainResidue
BSER13
BGLY15
BASP17
BSER18
BGLY127
DU34

site_idAC2
Number of Residues7
DetailsBINDING SITE FOR RESIDUE PO4 A 1002
ChainResidue
AASP17
ASER18
AGLY127
CU34
ASER13
AGLY15
AVAL16

site_idAC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE PO4 B 1003
ChainResidue
BLYS107
BGLY197
BILE198
BCYS199
BPHE200
DU34

site_idAC4
Number of Residues1
DetailsBINDING SITE FOR RESIDUE PO4 C 1004
ChainResidue
CU34

site_idAC5
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 A 2001
ChainResidue
AHIS70
ATHR71

site_idAC6
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 B 2002
ChainResidue
BHIS70
BTHR71

site_idAC7
Number of Residues1
DetailsBINDING SITE FOR RESIDUE SO4 A 2003
ChainResidue
AASN73

site_idAC8
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 B 2004
ChainResidue
BARG313
BGLN314
BTHR315

site_idAC9
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 A 2005
ChainResidue
AGLN314
ATHR315

Functional Information from PROSITE/UniProt
site_idPS00070
Number of Residues12
DetailsALDEHYDE_DEHYDR_CYS Aldehyde dehydrogenases cysteine active site. VfYNGEVCLGGG
ChainResidueDetails
AVAL347-GLY358

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsACT_SITE: Nucleophile => ECO:0000269|PubMed:16871210
ChainResidueDetails
ACYS102
BCYS102

site_idSWS_FT_FI2
Number of Residues2
DetailsACT_SITE: Cysteine persulfide intermediate => ECO:0000269|PubMed:16871210
ChainResidueDetails
ACYS199
BCYS199

site_idSWS_FT_FI3
Number of Residues6
DetailsBINDING:
ChainResidueDetails
AGLY11
AMET37
AGLY127
BGLY11
BMET37
BGLY127

site_idSWS_FT_FI4
Number of Residues4
DetailsSITE: Interaction with tRNA
ChainResidueDetails
AHIS128
AGLN344
BHIS128
BGLN344

Catalytic Information from CSA
site_idCSA1
Number of Residues2
DetailsAnnotated By Reference To The Literature 1kp2
ChainResidueDetails
AASP136
ALYS104

site_idCSA2
Number of Residues2
DetailsAnnotated By Reference To The Literature 1kp2
ChainResidueDetails
BASP136
BLYS104

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PDB entries from 2024-10-30

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