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2DDG

Crystal structure of uracil-DNA glycosylase in complex with AP:G containing DNA

Functional Information from GO Data
ChainGOidnamespacecontents
A0004844molecular_functionuracil DNA N-glycosylase activity
A0006281biological_processDNA repair
A0006284biological_processbase-excision repair
A0016787molecular_functionhydrolase activity
A0033958molecular_functionDNA-deoxyinosine glycosylase activity
A0046872molecular_functionmetal ion binding
A0051536molecular_functioniron-sulfur cluster binding
A0051539molecular_function4 iron, 4 sulfur cluster binding
A0097506molecular_functiondeaminated base DNA N-glycosylase activity
Functional Information from PDB Data
site_idAC1
Number of Residues2
DetailsBINDING SITE FOR RESIDUE ACT A 718
ChainResidue
APHE162
AHOH1191

site_idAC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE ACT D 719
ChainResidue
ALYS30
CDT5
DDA12
DDC13
DHOH1023

site_idAC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SF4 A 220
ChainResidue
ACYS16
ALEU19
ACYS115
ACYS130
ACYS13
ALEU15

site_idAC4
Number of Residues10
DetailsBINDING SITE FOR RESIDUE 2HP A 1001
ChainResidue
AALA59
APRO60
AGLY61
AGLY64
ASER65
APHE72
AASP75
AHOH1059
AHOH1080
CORP8

site_idAC5
Number of Residues4
DetailsBINDING SITE FOR RESIDUE 2HP D 1003
ChainResidue
AARG31
AGLU50
DDC13
DDA14

site_idAC6
Number of Residues8
DetailsBINDING SITE FOR RESIDUE GOL A 1004
ChainResidue
APRO37
ATYR38
ALEU84
AGLU87
AARG203
AHOH1019
AHOH1089
AHOH1147

site_idAC7
Number of Residues3
DetailsBINDING SITE FOR RESIDUE EOH A 1005
ChainResidue
ATHR202
AARG203
AHOH1169

site_idAC8
Number of Residues3
DetailsBINDING SITE FOR RESIDUE EOH A 1006
ChainResidue
AARG128
AALA131
AHOH1138

site_idAC9
Number of Residues1
DetailsBINDING SITE FOR RESIDUE EOH A 1007
ChainResidue
AARG132

site_idBC1
Number of Residues1
DetailsBINDING SITE FOR RESIDUE EOH A 1008
ChainResidue
AHIS63

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsBINDING: BINDING => ECO:0000269|Ref.4, ECO:0007744|PDB:2D3Y, ECO:0007744|PDB:2DDG, ECO:0007744|PDB:2DEM
ChainResidueDetails
ACYS13
ACYS16
ACYS115
ACYS130

Catalytic Information from CSA
site_idCSA1
Number of Residues1
DetailsAnnotated By Reference To The Literature 1mug
ChainResidueDetails
AALA59

223532

PDB entries from 2024-08-07

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