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2DB3

Structural basis for RNA unwinding by the DEAD-box protein Drosophila Vasa

Functional Information from GO Data
ChainGOidnamespacecontents
A0003676molecular_functionnucleic acid binding
A0003724molecular_functionRNA helicase activity
A0005524molecular_functionATP binding
B0003676molecular_functionnucleic acid binding
B0003724molecular_functionRNA helicase activity
B0005524molecular_functionATP binding
C0003676molecular_functionnucleic acid binding
C0003724molecular_functionRNA helicase activity
C0005524molecular_functionATP binding
D0003676molecular_functionnucleic acid binding
D0003724molecular_functionRNA helicase activity
D0005524molecular_functionATP binding
Functional Information from PDB Data
site_idAC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG A 2801
ChainResidue
AASP399
AANP2901
AHOH2903
AHOH3008
AHOH3054
AHOH3105

site_idAC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG B 2802
ChainResidue
BHOH3044
BHOH3046
BHOH3118
BASP399
BANP2902
BHOH2903

site_idAC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG C 2803
ChainResidue
CASP399
CANP2903
CHOH2904
CHOH2905
CHOH3177
CHOH3178

site_idAC4
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG D 2804
ChainResidue
DASP399
DANP2904
DHOH2905
DHOH3034
DHOH3095
DHOH3096

site_idAC5
Number of Residues27
DetailsBINDING SITE FOR RESIDUE ANP A 2901
ChainResidue
AGLY218
AILE219
APHE225
APHE247
ATYR265
AILE267
AGLN272
ATHR291
AGLY292
ASER293
AGLY294
ALYS295
ATHR296
AGLU400
AGLY552
AASP554
AARG579
AARG582
AVAL583
AMG2801
AHOH2902
AHOH2903
AHOH2905
AHOH2910
AHOH2912
AHOH2934
AHOH3030

site_idAC6
Number of Residues25
DetailsBINDING SITE FOR RESIDUE ANP B 2902
ChainResidue
BGLY218
BILE219
BPHE247
BTYR265
BILE267
BGLN272
BTHR291
BGLY292
BSER293
BGLY294
BLYS295
BTHR296
BGLU400
BGLY552
BASP554
BARG579
BARG582
BVAL583
BMG2802
BHOH2924
BHOH2935
BHOH2945
BHOH2948
BHOH2971
BHOH3044

site_idAC7
Number of Residues29
DetailsBINDING SITE FOR RESIDUE ANP C 2903
ChainResidue
CHOH2954
CHOH2958
CHOH2987
CHOH3018
CHOH3178
CHOH3296
CGLY218
CILE219
CTYR265
CILE267
CTHR269
CGLN272
CTHR291
CGLY292
CSER293
CGLY294
CLYS295
CTHR296
CGLU400
CGLY552
CASP554
CARG579
CARG582
CVAL583
CMG2803
CHOH2905
CHOH2906
CHOH2934
CHOH2937

site_idAC8
Number of Residues23
DetailsBINDING SITE FOR RESIDUE ANP D 2904
ChainResidue
DILE219
DTYR265
DILE267
DGLN272
DTHR291
DGLY292
DSER293
DGLY294
DLYS295
DTHR296
DGLU400
DGLY552
DASP554
DARG579
DARG582
DVAL583
DMG2804
DHOH2906
DHOH2913
DHOH2919
DHOH2999
DHOH3034
DHOH3155

Functional Information from PROSITE/UniProt
site_idPS00039
Number of Residues9
DetailsDEAD_ATP_HELICASE DEAD-box subfamily ATP-dependent helicases signature. VLDEADRmL
ChainResidueDetails
AVAL397-LEU405

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsBINDING: BINDING => ECO:0000255|PROSITE-ProRule:PRU00541
ChainResidueDetails
AALA289
BALA289
CALA289
DALA289

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PDB entries from 2024-11-06

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