Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

2D4K

Monoclinic hen egg-white lysozyme crystallized at 313K

Functional Information from GO Data
ChainGOidnamespacecontents
A0003796molecular_functionlysozyme activity
A0003824molecular_functioncatalytic activity
A0005515molecular_functionprotein binding
A0005576cellular_componentextracellular region
A0005615cellular_componentextracellular space
A0005737cellular_componentcytoplasm
A0005783cellular_componentendoplasmic reticulum
A0008152biological_processmetabolic process
A0016231molecular_functionbeta-N-acetylglucosaminidase activity
A0016787molecular_functionhydrolase activity
A0016798molecular_functionhydrolase activity, acting on glycosyl bonds
A0016998biological_processcell wall macromolecule catabolic process
A0031640biological_processkilling of cells of another organism
A0042742biological_processdefense response to bacterium
A0042802molecular_functionidentical protein binding
A0050829biological_processdefense response to Gram-negative bacterium
A0050830biological_processdefense response to Gram-positive bacterium
A0051672biological_processobsolete catabolism by organism of cell wall peptidoglycan in other organism
N0003796molecular_functionlysozyme activity
N0003824molecular_functioncatalytic activity
N0005515molecular_functionprotein binding
N0005576cellular_componentextracellular region
N0005615cellular_componentextracellular space
N0005737cellular_componentcytoplasm
N0005783cellular_componentendoplasmic reticulum
N0008152biological_processmetabolic process
N0016231molecular_functionbeta-N-acetylglucosaminidase activity
N0016787molecular_functionhydrolase activity
N0016798molecular_functionhydrolase activity, acting on glycosyl bonds
N0016998biological_processcell wall macromolecule catabolic process
N0031640biological_processkilling of cells of another organism
N0042742biological_processdefense response to bacterium
N0042802molecular_functionidentical protein binding
N0050829biological_processdefense response to Gram-negative bacterium
N0050830biological_processdefense response to Gram-positive bacterium
N0051672biological_processobsolete catabolism by organism of cell wall peptidoglycan in other organism
Functional Information from PDB Data
site_idAC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE NA A 401
ChainResidue
ASER60
ACYS64
ASER72
AARG73
AHOH402
AHOH403

site_idAC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE CL A 405
ChainResidue
ASER72
AASN65
AASP66
AGLY67

site_idAC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE NA N 406
ChainResidue
NSER260
NCYS264
NSER272
NARG273
NHOH407
NHOH408

site_idAC4
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CL N 409
ChainResidue
NASN265
NGLY267
NARG268
NTHR269
NSER272
NHOH407

site_idAC5
Number of Residues1
DetailsBINDING SITE FOR RESIDUE CL N 410
ChainResidue
NTRP263

site_idAC6
Number of Residues2
DetailsBINDING SITE FOR RESIDUE CL N 411
ChainResidue
NSER224
NGLY226

Functional Information from PROSITE/UniProt
site_idPS00128
Number of Residues19
DetailsGLYCOSYL_HYDROL_F22_1 Glycosyl hydrolases family 22 (GH22) domain signature. CnipCsaLlssDItasvnC
ChainResidueDetails
ACYS76-CYS94

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsACT_SITE:
ChainResidueDetails
AGLU35
AASP52
NGLU235
NASP252

site_idSWS_FT_FI2
Number of Residues2
DetailsBINDING:
ChainResidueDetails
AASP101
NASP301

Catalytic Information from CSA
site_idMCSA1
Number of Residues6
DetailsM-CSA 203
ChainResidueDetails
AGLU35hydrogen bond acceptor, hydrogen bond donor, proton acceptor, proton donor
AASN46
AASP48
ASER50
AASP52covalently attached, electrostatic stabiliser, nucleofuge, nucleophile, polar/non-polar interaction
AASN59

site_idMCSA2
Number of Residues6
DetailsM-CSA 203
ChainResidueDetails
NGLU235hydrogen bond acceptor, hydrogen bond donor, proton acceptor, proton donor
NASN246
NASP248
NSER250
NASP252covalently attached, electrostatic stabiliser, nucleofuge, nucleophile, polar/non-polar interaction
NASN259

218500

PDB entries from 2024-04-17

PDB statisticsPDBj update infoContact PDBjnumon