2CNW
GDPALF4 complex of the SRP GTPases Ffh and FtsY
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0003924 | molecular_function | GTPase activity |
A | 0005525 | molecular_function | GTP binding |
A | 0006614 | biological_process | SRP-dependent cotranslational protein targeting to membrane |
A | 0016887 | molecular_function | ATP hydrolysis activity |
A | 0048500 | cellular_component | signal recognition particle |
B | 0003924 | molecular_function | GTPase activity |
B | 0005525 | molecular_function | GTP binding |
B | 0006614 | biological_process | SRP-dependent cotranslational protein targeting to membrane |
B | 0016887 | molecular_function | ATP hydrolysis activity |
B | 0048500 | cellular_component | signal recognition particle |
C | 0003924 | molecular_function | GTPase activity |
C | 0005525 | molecular_function | GTP binding |
C | 0006614 | biological_process | SRP-dependent cotranslational protein targeting to membrane |
C | 0016887 | molecular_function | ATP hydrolysis activity |
C | 0048500 | cellular_component | signal recognition particle |
D | 0003924 | molecular_function | GTPase activity |
D | 0005047 | molecular_function | signal recognition particle binding |
D | 0005515 | molecular_function | protein binding |
D | 0005525 | molecular_function | GTP binding |
D | 0005737 | cellular_component | cytoplasm |
D | 0005886 | cellular_component | plasma membrane |
D | 0006605 | biological_process | protein targeting |
D | 0006612 | biological_process | protein targeting to membrane |
D | 0006614 | biological_process | SRP-dependent cotranslational protein targeting to membrane |
D | 0016020 | cellular_component | membrane |
D | 0016787 | molecular_function | hydrolase activity |
D | 0016887 | molecular_function | ATP hydrolysis activity |
E | 0003924 | molecular_function | GTPase activity |
E | 0005047 | molecular_function | signal recognition particle binding |
E | 0005515 | molecular_function | protein binding |
E | 0005525 | molecular_function | GTP binding |
E | 0005737 | cellular_component | cytoplasm |
E | 0005886 | cellular_component | plasma membrane |
E | 0006605 | biological_process | protein targeting |
E | 0006612 | biological_process | protein targeting to membrane |
E | 0006614 | biological_process | SRP-dependent cotranslational protein targeting to membrane |
E | 0016020 | cellular_component | membrane |
E | 0016787 | molecular_function | hydrolase activity |
E | 0016887 | molecular_function | ATP hydrolysis activity |
F | 0003924 | molecular_function | GTPase activity |
F | 0005047 | molecular_function | signal recognition particle binding |
F | 0005515 | molecular_function | protein binding |
F | 0005525 | molecular_function | GTP binding |
F | 0005737 | cellular_component | cytoplasm |
F | 0005886 | cellular_component | plasma membrane |
F | 0006605 | biological_process | protein targeting |
F | 0006612 | biological_process | protein targeting to membrane |
F | 0006614 | biological_process | SRP-dependent cotranslational protein targeting to membrane |
F | 0016020 | cellular_component | membrane |
F | 0016787 | molecular_function | hydrolase activity |
F | 0016887 | molecular_function | ATP hydrolysis activity |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE MG A1002 |
Chain | Residue |
A | THR112 |
A | GDP1001 |
A | ALF1007 |
A | HOH2038 |
A | HOH2058 |
A | HOH2085 |
site_id | AC2 |
Number of Residues | 14 |
Details | BINDING SITE FOR RESIDUE ALF A1007 |
Chain | Residue |
A | ASP135 |
A | ARG138 |
A | THR188 |
A | GLY190 |
A | GDP1001 |
A | MG1002 |
A | HOH2038 |
A | HOH2048 |
A | HOH2058 |
A | HOH2085 |
D | GDP1001 |
A | GLN107 |
A | GLY108 |
A | LYS111 |
site_id | AC3 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE MG B1002 |
Chain | Residue |
B | THR112 |
B | GDP1001 |
B | ALF1007 |
B | HOH2027 |
B | HOH2046 |
B | HOH2064 |
site_id | AC4 |
Number of Residues | 14 |
Details | BINDING SITE FOR RESIDUE ALF B1007 |
Chain | Residue |
B | LEU106 |
B | GLN107 |
B | GLY108 |
B | LYS111 |
B | ASP135 |
B | ARG138 |
B | GLY190 |
B | GDP1001 |
B | MG1002 |
B | HOH2027 |
B | HOH2036 |
B | HOH2046 |
B | HOH2064 |
E | GDP1001 |
site_id | AC5 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE MG C1002 |
Chain | Residue |
C | THR112 |
C | GDP1001 |
C | ALF1007 |
C | HOH2053 |
C | HOH2082 |
C | HOH2117 |
site_id | AC6 |
Number of Residues | 14 |
Details | BINDING SITE FOR RESIDUE ALF C1007 |
Chain | Residue |
C | GLN107 |
C | GLY108 |
C | LYS111 |
C | ASP135 |
C | ARG138 |
C | THR188 |
C | GLY190 |
C | GDP1001 |
C | MG1002 |
C | HOH2053 |
C | HOH2054 |
C | HOH2082 |
C | HOH2117 |
F | GDP1001 |
site_id | AC7 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE MG D1002 |
Chain | Residue |
D | THR116 |
D | GDP1001 |
D | ALF1007 |
D | HOH2035 |
D | HOH2057 |
D | HOH2098 |
site_id | AC8 |
Number of Residues | 15 |
Details | BINDING SITE FOR RESIDUE ALF D1007 |
Chain | Residue |
A | GDP1001 |
D | ASN111 |
D | GLY112 |
D | LYS115 |
D | ASP139 |
D | ARG142 |
D | ALA193 |
D | GLY194 |
D | GDP1001 |
D | MG1002 |
D | HOH2033 |
D | HOH2035 |
D | HOH2057 |
D | HOH2098 |
D | HOH2099 |
site_id | AC9 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE MG E1002 |
Chain | Residue |
E | THR116 |
E | GDP1001 |
E | ALF1007 |
E | HOH2030 |
E | HOH2056 |
E | HOH2094 |
site_id | BC1 |
Number of Residues | 14 |
Details | BINDING SITE FOR RESIDUE ALF E1007 |
Chain | Residue |
E | HOH2056 |
E | HOH2094 |
B | GDP1001 |
B | HOH2040 |
E | ASN111 |
E | GLY112 |
E | LYS115 |
E | ASP139 |
E | ARG142 |
E | GLY194 |
E | GDP1001 |
E | MG1002 |
E | HOH2030 |
E | HOH2031 |
site_id | BC2 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE MG F1002 |
Chain | Residue |
F | THR116 |
F | GDP1001 |
F | ALF1007 |
F | HOH2027 |
F | HOH2046 |
F | HOH2071 |
site_id | BC3 |
Number of Residues | 14 |
Details | BINDING SITE FOR RESIDUE ALF F1007 |
Chain | Residue |
C | GDP1001 |
F | ASN111 |
F | GLY112 |
F | LYS115 |
F | ASP139 |
F | ARG142 |
F | GLY194 |
F | GDP1001 |
F | MG1002 |
F | HOH2027 |
F | HOH2028 |
F | HOH2046 |
F | HOH2069 |
F | HOH2071 |
site_id | BC4 |
Number of Residues | 26 |
Details | BINDING SITE FOR RESIDUE GDP A1001 |
Chain | Residue |
A | GLY108 |
A | SER109 |
A | GLY110 |
A | LYS111 |
A | THR112 |
A | THR113 |
A | LYS117 |
A | ARG138 |
A | GLN144 |
A | LYS246 |
A | ASP248 |
A | GLY271 |
A | VAL272 |
A | SER273 |
A | GLU274 |
A | MG1002 |
A | ALF1007 |
A | HOH2041 |
A | HOH2058 |
A | HOH2085 |
A | HOH2124 |
D | ASN111 |
D | GLY112 |
D | ARG142 |
D | LEU196 |
D | ALF1007 |
site_id | BC5 |
Number of Residues | 25 |
Details | BINDING SITE FOR RESIDUE GDP B1001 |
Chain | Residue |
B | GLY108 |
B | SER109 |
B | GLY110 |
B | LYS111 |
B | THR112 |
B | THR113 |
B | LYS117 |
B | ARG138 |
B | GLN144 |
B | LYS246 |
B | ASP248 |
B | GLY271 |
B | VAL272 |
B | SER273 |
B | GLU274 |
B | MG1002 |
B | ALF1007 |
B | HOH2046 |
B | HOH2064 |
B | HOH2094 |
B | HOH2104 |
E | ASN111 |
E | ARG142 |
E | LEU196 |
E | ALF1007 |
site_id | BC6 |
Number of Residues | 27 |
Details | BINDING SITE FOR RESIDUE GDP C1001 |
Chain | Residue |
C | GLY108 |
C | SER109 |
C | GLY110 |
C | LYS111 |
C | THR112 |
C | THR113 |
C | LYS117 |
C | ARG138 |
C | GLN144 |
C | LYS246 |
C | ASP248 |
C | GLY271 |
C | VAL272 |
C | SER273 |
C | GLU274 |
C | MG1002 |
C | ALF1007 |
C | HOH2045 |
C | HOH2082 |
C | HOH2117 |
C | HOH2118 |
F | ASN111 |
F | GLY112 |
F | ARG142 |
F | LEU196 |
F | ALF1007 |
F | HOH2018 |
site_id | BC7 |
Number of Residues | 24 |
Details | BINDING SITE FOR RESIDUE GDP D1001 |
Chain | Residue |
A | GLN107 |
A | ARG138 |
A | ALF1007 |
D | GLY112 |
D | VAL113 |
D | GLY114 |
D | LYS115 |
D | THR116 |
D | THR117 |
D | LYS121 |
D | GLN148 |
D | LYS256 |
D | ASP258 |
D | GLY281 |
D | VAL282 |
D | GLY283 |
D | GLU284 |
D | MG1002 |
D | ALF1007 |
D | HOH2025 |
D | HOH2057 |
D | HOH2098 |
D | HOH2099 |
D | HOH2100 |
site_id | BC8 |
Number of Residues | 13 |
Details | BINDING SITE FOR RESIDUE 5GP D3001 |
Chain | Residue |
A | SER164 |
A | SER167 |
A | GLU274 |
D | PHE141 |
D | ALA193 |
D | GLY194 |
D | LEU202 |
D | GLU205 |
D | HOH2064 |
D | HOH2101 |
D | HOH2102 |
D | HOH2103 |
D | HOH2104 |
site_id | BC9 |
Number of Residues | 24 |
Details | BINDING SITE FOR RESIDUE GDP E1001 |
Chain | Residue |
B | GLN107 |
B | ARG138 |
B | ALF1007 |
B | HOH2040 |
E | GLY112 |
E | VAL113 |
E | GLY114 |
E | LYS115 |
E | THR116 |
E | THR117 |
E | LYS121 |
E | GLN148 |
E | LYS256 |
E | ASP258 |
E | GLY281 |
E | VAL282 |
E | GLY283 |
E | GLU284 |
E | MG1002 |
E | ALF1007 |
E | HOH2022 |
E | HOH2056 |
E | HOH2094 |
E | HOH2095 |
site_id | CC1 |
Number of Residues | 12 |
Details | BINDING SITE FOR RESIDUE 5GP E3001 |
Chain | Residue |
B | SER164 |
B | SER167 |
B | ARG170 |
B | GLU274 |
B | LYS275 |
E | PHE141 |
E | ALA193 |
E | GLY194 |
E | LEU202 |
E | GLU205 |
E | HOH2096 |
E | HOH2097 |
site_id | CC2 |
Number of Residues | 24 |
Details | BINDING SITE FOR RESIDUE GDP F1001 |
Chain | Residue |
C | GLN107 |
C | ARG138 |
C | ALF1007 |
F | GLY112 |
F | VAL113 |
F | GLY114 |
F | LYS115 |
F | THR116 |
F | THR117 |
F | LYS121 |
F | GLN148 |
F | LYS256 |
F | ASP258 |
F | GLY281 |
F | VAL282 |
F | GLY283 |
F | GLU284 |
F | MG1002 |
F | ALF1007 |
F | HOH2020 |
F | HOH2046 |
F | HOH2069 |
F | HOH2070 |
F | HOH2071 |
site_id | CC3 |
Number of Residues | 12 |
Details | BINDING SITE FOR RESIDUE 5GP F3001 |
Chain | Residue |
C | SER164 |
C | SER167 |
C | ARG170 |
C | GLU274 |
C | LYS275 |
C | HOH2075 |
F | PHE141 |
F | ALA193 |
F | GLY194 |
F | LEU202 |
F | GLU205 |
F | HOH2073 |
Functional Information from PROSITE/UniProt
site_id | PS00300 |
Number of Residues | 14 |
Details | SRP54 SRP54-type proteins GTP-binding domain signature. PIkFVGVGEgPddL |
Chain | Residue | Details |
D | PRO276-LEU289 | |
A | PRO266-LEU279 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 9 |
Details | BINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_00920 |
Chain | Residue | Details |
D | VAL110 | |
D | THR192 | |
D | LYS256 | |
E | VAL110 | |
E | THR192 | |
E | LYS256 | |
F | VAL110 | |
F | THR192 | |
F | LYS256 |