2CB3
Crystal structure of peptidoglycan recognition protein-LE in complex with tracheal cytotoxin (monomeric diaminopimelic acid-type peptidoglycan)
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0008270 | molecular_function | zinc ion binding |
A | 0008745 | molecular_function | N-acetylmuramoyl-L-alanine amidase activity |
A | 0009253 | biological_process | peptidoglycan catabolic process |
A | 0042834 | molecular_function | peptidoglycan binding |
A | 0045087 | biological_process | innate immune response |
B | 0008270 | molecular_function | zinc ion binding |
B | 0008745 | molecular_function | N-acetylmuramoyl-L-alanine amidase activity |
B | 0009253 | biological_process | peptidoglycan catabolic process |
B | 0042834 | molecular_function | peptidoglycan binding |
B | 0045087 | biological_process | innate immune response |
C | 0008270 | molecular_function | zinc ion binding |
C | 0008745 | molecular_function | N-acetylmuramoyl-L-alanine amidase activity |
C | 0009253 | biological_process | peptidoglycan catabolic process |
C | 0042834 | molecular_function | peptidoglycan binding |
C | 0045087 | biological_process | innate immune response |
D | 0008270 | molecular_function | zinc ion binding |
D | 0008745 | molecular_function | N-acetylmuramoyl-L-alanine amidase activity |
D | 0009253 | biological_process | peptidoglycan catabolic process |
D | 0042834 | molecular_function | peptidoglycan binding |
D | 0045087 | biological_process | innate immune response |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 28 |
Details | BINDING SITE FOR RESIDUE MLD A1345 |
Chain | Residue |
A | HIS206 |
A | HIS262 |
A | LEU264 |
A | ASN267 |
A | HIS314 |
A | ASN318 |
A | THR320 |
A | GLU321 |
A | SER322 |
A | HOH2027 |
A | HOH2038 |
A | THR207 |
A | HOH2040 |
A | HOH2052 |
A | HOH2054 |
B | GLN186 |
B | ARG223 |
B | ASP224 |
B | SER227 |
B | GLU231 |
D | ARG215 |
A | HIS229 |
A | ARG233 |
A | TRP235 |
A | ASN236 |
A | TYR240 |
A | ARG254 |
A | ALA261 |
site_id | AC2 |
Number of Residues | 28 |
Details | BINDING SITE FOR RESIDUE MLD B1344 |
Chain | Residue |
B | HIS206 |
B | THR207 |
B | MET225 |
B | HIS229 |
B | ARG233 |
B | TRP235 |
B | ASN236 |
B | TYR240 |
B | ARG254 |
B | ALA261 |
B | HIS262 |
B | ASN267 |
B | ARG268 |
B | HIS314 |
B | ASN318 |
B | THR320 |
B | GLU321 |
B | SER322 |
B | HOH2026 |
B | HOH2042 |
B | HOH2059 |
B | HOH2060 |
B | HOH2062 |
B | HOH2063 |
C | ARG215 |
D | ARG223 |
D | SER227 |
D | GLU231 |
site_id | AC3 |
Number of Residues | 27 |
Details | BINDING SITE FOR RESIDUE MLD C1344 |
Chain | Residue |
A | ARG223 |
A | ASP224 |
A | SER227 |
A | GLU231 |
B | ARG215 |
C | HIS206 |
C | THR207 |
C | HIS229 |
C | ARG233 |
C | TRP235 |
C | ASN236 |
C | TYR240 |
C | ARG254 |
C | ALA261 |
C | HIS262 |
C | LEU264 |
C | ASN267 |
C | HIS314 |
C | ASN318 |
C | THR320 |
C | GLU321 |
C | SER322 |
C | HOH2023 |
C | HOH2033 |
C | HOH2036 |
C | HOH2045 |
C | HOH2048 |
site_id | AC4 |
Number of Residues | 28 |
Details | BINDING SITE FOR RESIDUE MLD D1344 |
Chain | Residue |
D | ASN267 |
D | HIS314 |
D | ASN318 |
D | THR320 |
D | GLU321 |
D | SER322 |
D | HOH2017 |
D | HOH2031 |
D | HOH2033 |
D | HOH2034 |
D | HOH2035 |
D | HOH2037 |
A | ARG215 |
C | ARG223 |
C | ASP224 |
C | SER227 |
C | GLU231 |
D | HIS206 |
D | THR207 |
D | HIS229 |
D | ARG233 |
D | TRP235 |
D | ASN236 |
D | TYR240 |
D | ARG254 |
D | ALA261 |
D | HIS262 |
D | LEU264 |
site_id | AC5 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE GOL A1344 |
Chain | Residue |
A | GLU210 |
A | SER211 |
A | GLY277 |
A | CYS278 |
A | PHE279 |
A | GLU282 |
B | HOH2006 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 20 |
Details | BINDING: |
Chain | Residue | Details |
A | HIS206 | |
B | HIS314 | |
C | HIS206 | |
C | HIS229 | |
C | ARG254 | |
C | ALA261 | |
C | HIS314 | |
D | HIS206 | |
D | HIS229 | |
D | ARG254 | |
D | ALA261 | |
A | HIS229 | |
D | HIS314 | |
A | ARG254 | |
A | ALA261 | |
A | HIS314 | |
B | HIS206 | |
B | HIS229 | |
B | ARG254 | |
B | ALA261 |
site_id | SWS_FT_FI2 |
Number of Residues | 4 |
Details | CARBOHYD: N-linked (GlcNAc...) asparagine => ECO:0000255 |
Chain | Residue | Details |
A | ASN318 | |
B | ASN318 | |
C | ASN318 | |
D | ASN318 |