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2C59

gdp-mannose-3', 5' -epimerase (arabidopsis thaliana), with gdp-alpha-d-mannose and gdp-beta-l-galactose bound in the active site.

Functional Information from GO Data
ChainGOidnamespacecontents
A0000166molecular_functionnucleotide binding
A0005829cellular_componentcytosol
A0009536cellular_componentplastid
A0016853molecular_functionisomerase activity
A0019853biological_processL-ascorbic acid biosynthetic process
A0047918molecular_functionGDP-mannose 3,5-epimerase activity
A0051287molecular_functionNAD binding
B0000166molecular_functionnucleotide binding
B0005829cellular_componentcytosol
B0009536cellular_componentplastid
B0016853molecular_functionisomerase activity
B0019853biological_processL-ascorbic acid biosynthetic process
B0047918molecular_functionGDP-mannose 3,5-epimerase activity
B0051287molecular_functionNAD binding
Functional Information from PDB Data
site_idAC1
Number of Residues27
DetailsBINDING SITE FOR RESIDUE GDD A1377
ChainResidue
AMET102
AASN203
AGLU216
ALYS217
AALA218
AALA221
APHE222
ALYS225
ATRP236
AGLN241
AARG243
AGLY103
AMET277
APRO300
AGLU301
AARG306
ASER356
AHOH2217
AHOH2295
AHOH2380
AGLY104
AMET105
AILE108
ASER143
AALA144
ACYS145
ATYR174

site_idAC2
Number of Residues29
DetailsBINDING SITE FOR RESIDUE GDC A1378
ChainResidue
AMET102
AGLY103
AGLY104
AMET105
AILE108
ASER143
ACYS145
ATYR174
APHE201
AHIS202
AASN203
AGLU216
ALYS217
AALA218
AALA221
APHE222
ALYS225
ATRP236
AGLN241
AARG243
AMET277
APRO300
AGLU301
AARG306
ASER356
ANAD1379
AHOH2217
AHOH2295
AHOH2380

site_idAC3
Number of Residues36
DetailsBINDING SITE FOR RESIDUE NAD A1379
ChainResidue
AGLY34
AGLY36
AGLY37
APHE38
AILE39
AASP58
ATRP59
ALYS60
AVAL77
AASP78
ALEU79
AARG80
ALEU98
AALA99
AALA100
AMET102
AILE122
AALA141
ASER142
ASER143
ATYR174
ALYS178
APHE201
AASN203
AILE204
ALYS217
AGDC1378
AHOH2097
AHOH2381
AHOH2382
AHOH2383
AHOH2384
AHOH2385
AHOH2386
AHOH2387
AHOH2388

site_idAC4
Number of Residues11
DetailsBINDING SITE FOR RESIDUE BTB B1376
ChainResidue
BGLU90
BGLY91
BHOH2141
BHOH2448
AFMT1382
AHOH2319
BLYS29
BTYR53
BILE55
BGLU73
BLYS87

site_idAC5
Number of Residues28
DetailsBINDING SITE FOR RESIDUE GDD B1377
ChainResidue
BMET102
BGLY103
BGLY104
BMET105
BILE108
BSER143
BCYS145
BTYR174
BPHE201
BHIS202
BASN203
BGLU216
BLYS217
BALA218
BALA221
BPHE222
BLYS225
BMET235
BTRP236
BGLN241
BARG243
BMET277
BPRO300
BGLU301
BSER356
BHOH2449
BHOH2450
BHOH2451

site_idAC6
Number of Residues29
DetailsBINDING SITE FOR RESIDUE GDC B1378
ChainResidue
BMET102
BGLY103
BGLY104
BMET105
BILE108
BSER143
BCYS145
BTYR174
BPHE201
BASN203
BGLU216
BLYS217
BALA218
BALA221
BPHE222
BLYS225
BMET235
BTRP236
BGLN241
BARG243
BMET277
BPRO300
BGLU301
BARG306
BSER356
BNAD1380
BHOH2449
BHOH2450
BHOH2451

site_idAC7
Number of Residues36
DetailsBINDING SITE FOR RESIDUE NAD B1380
ChainResidue
BGLY34
BGLY36
BGLY37
BPHE38
BILE39
BASP58
BTRP59
BLYS60
BVAL77
BASP78
BLEU79
BARG80
BLEU98
BALA99
BALA100
BMET102
BILE122
BALA141
BSER142
BSER143
BTYR174
BLYS178
BPHE201
BASN203
BILE204
BLYS217
BARG371
BGDC1378
BHOH2152
BHOH2156
BHOH2282
BHOH2452
BHOH2453
BHOH2454
BHOH2455
BHOH2456

site_idAC8
Number of Residues8
DetailsBINDING SITE FOR RESIDUE FMT A1380
ChainResidue
ALYS212
AGLY213
AARG224
ALEU352
ATYR353
ASER355
ALYS357
AHOH2218

site_idAC9
Number of Residues2
DetailsBINDING SITE FOR RESIDUE FMT A1381
ChainResidue
APHE150
BPRO167

site_idBC1
Number of Residues7
DetailsBINDING SITE FOR RESIDUE FMT A1382
ChainResidue
AGLU18
AARG257
AGLY318
ATRP319
BLYS29
BBTB1376
BHOH2147

site_idBC2
Number of Residues1
DetailsBINDING SITE FOR RESIDUE FMT B1371
ChainResidue
BHOH2440

site_idBC3
Number of Residues2
DetailsBINDING SITE FOR RESIDUE FMT B1372
ChainResidue
BARG215
BGLN362

site_idBC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE FMT B1373
ChainResidue
BSER229
BTHR230
BASP231
BARG232

site_idBC5
Number of Residues7
DetailsBINDING SITE FOR RESIDUE FMT B1374
ChainResidue
AVAL77
AASP78
AASN84
AGLY368
ASER369
BHIS295
BHOH2444

site_idBC6
Number of Residues4
DetailsBINDING SITE FOR RESIDUE FMT B1375
ChainResidue
APRO167
BPHE150
BHOH2445
BHOH2446

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsACT_SITE: Proton acceptor => ECO:0000250
ChainResidueDetails
ATYR174
BTYR174

site_idSWS_FT_FI2
Number of Residues10
DetailsBINDING: BINDING => ECO:0000269|PubMed:16366586
ChainResidueDetails
AGLY34
BLYS178
AASP58
AASP78
ATYR174
ALYS178
BGLY34
BASP58
BASP78
BTYR174

site_idSWS_FT_FI3
Number of Residues16
DetailsBINDING:
ChainResidueDetails
AGLY103
BSER143
BASN203
BGLU216
BLYS225
BGLN241
BARG306
BSER356
ASER143
AASN203
AGLU216
ALYS225
AGLN241
AARG306
ASER356
BGLY103

site_idSWS_FT_FI4
Number of Residues2
DetailsMOD_RES: N-acetylglycine => ECO:0007744|PubMed:22223895
ChainResidueDetails
AGLY2
BGLY2

site_idSWS_FT_FI5
Number of Residues2
DetailsMOD_RES: Phosphoserine => ECO:0007744|PubMed:19376835
ChainResidueDetails
ASER369
BSER369

Catalytic Information from CSA
site_idCSA1
Number of Residues3
DetailsAnnotated By Reference To The Literature 1eq2
ChainResidueDetails
ASER143
ATYR174
ALYS178

site_idCSA2
Number of Residues3
DetailsAnnotated By Reference To The Literature 1eq2
ChainResidueDetails
BSER143
BTYR174
BLYS178

site_idCSA3
Number of Residues3
DetailsAnnotated By Reference To The Literature 1eq2
ChainResidueDetails
ASER142
ATYR174
ALYS178

site_idCSA4
Number of Residues3
DetailsAnnotated By Reference To The Literature 1eq2
ChainResidueDetails
BSER142
BTYR174
BLYS178

site_idCSA5
Number of Residues4
DetailsAnnotated By Reference To The Literature 1eq2
ChainResidueDetails
ASER143
ATYR174
AASN119
ALYS178

site_idCSA6
Number of Residues4
DetailsAnnotated By Reference To The Literature 1eq2
ChainResidueDetails
BSER143
BTYR174
BASN119
BLYS178

site_idCSA7
Number of Residues2
DetailsAnnotated By Reference To The Literature 1eq2
ChainResidueDetails
ATYR174
ALYS178

site_idCSA8
Number of Residues2
DetailsAnnotated By Reference To The Literature 1eq2
ChainResidueDetails
BTYR174
BLYS178

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PDB entries from 2024-07-17

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