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2C1H

The X-ray Structure of Chlorobium vibrioforme 5-Aminolaevulinic Acid Dehydratase Complexed with a Diacid Inhibitor

Functional Information from GO Data
ChainGOidnamespacecontents
A0004655molecular_functionporphobilinogen synthase activity
A0005829cellular_componentcytosol
A0006782biological_processprotoporphyrinogen IX biosynthetic process
A0006783biological_processheme biosynthetic process
A0008270molecular_functionzinc ion binding
A0016829molecular_functionlyase activity
A0033014biological_processtetrapyrrole biosynthetic process
A0046872molecular_functionmetal ion binding
B0004655molecular_functionporphobilinogen synthase activity
B0005829cellular_componentcytosol
B0006782biological_processprotoporphyrinogen IX biosynthetic process
B0006783biological_processheme biosynthetic process
B0008270molecular_functionzinc ion binding
B0016829molecular_functionlyase activity
B0033014biological_processtetrapyrrole biosynthetic process
B0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG A1329
ChainResidue
AARG176
AGLU238
AHOH2070
AHOH2071
AHOH2072
AHOH2096

site_idAC2
Number of Residues7
DetailsBINDING SITE FOR RESIDUE MG B1329
ChainResidue
BHOH2070
BHOH2071
BHOH2091
BHOH2095
BARG176
BGLU238
BASP242

site_idAC3
Number of Residues11
DetailsBINDING SITE FOR RESIDUE DSB A1330
ChainResidue
ASER170
ALYS200
ATYR206
APHE209
AARG210
ALYS222
ALYS253
ATYR276
AVAL278
ASER279
ATYR318

site_idAC4
Number of Residues13
DetailsBINDING SITE FOR RESIDUE DSB B1330
ChainResidue
BSER170
BLYS200
BTYR206
BPHE209
BARG210
BLYS222
BLYS253
BTYR276
BVAL278
BSER279
BTYR318
BHOH2125
BHOH2126

Functional Information from PROSITE/UniProt
site_idPS00169
Number of Residues13
DetailsD_ALA_DEHYDRATASE Delta-aminolevulinic acid dehydratase active site. GaDiVMVKPGlaY
ChainResidueDetails
AGLY246-TYR258

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsACT_SITE: Schiff-base intermediate with substrate
ChainResidueDetails
ALYS200
ALYS253
BLYS200
BLYS253

site_idSWS_FT_FI2
Number of Residues8
DetailsBINDING:
ChainResidueDetails
AARG210
ALYS222
ASER279
ATYR318
BARG210
BLYS222
BSER279
BTYR318

site_idSWS_FT_FI3
Number of Residues2
DetailsBINDING: BINDING => ECO:0000269|PubMed:15327955, ECO:0000269|PubMed:16304458
ChainResidueDetails
AGLU238
BGLU238

Catalytic Information from CSA
site_idCSA1
Number of Residues4
DetailsAnnotated By Reference To The Literature 1h7o
ChainResidueDetails
ASER170
ALYS200
AASP123
ALYS253

site_idCSA2
Number of Residues4
DetailsAnnotated By Reference To The Literature 1h7o
ChainResidueDetails
BSER170
BLYS200
BASP123
BLYS253

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PDB entries from 2024-09-04

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