2BND
The structure of E. coli UMP kinase in complex with UDP
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0000166 | molecular_function | nucleotide binding |
A | 0003824 | molecular_function | catalytic activity |
A | 0005524 | molecular_function | ATP binding |
A | 0005737 | cellular_component | cytoplasm |
A | 0005829 | cellular_component | cytosol |
A | 0006221 | biological_process | pyrimidine nucleotide biosynthetic process |
A | 0006225 | biological_process | UDP biosynthetic process |
A | 0016301 | molecular_function | kinase activity |
A | 0016740 | molecular_function | transferase activity |
A | 0033862 | molecular_function | UMP kinase activity |
A | 0042802 | molecular_function | identical protein binding |
A | 0044210 | biological_process | 'de novo' CTP biosynthetic process |
A | 0046940 | biological_process | nucleoside monophosphate phosphorylation |
B | 0000166 | molecular_function | nucleotide binding |
B | 0003824 | molecular_function | catalytic activity |
B | 0005524 | molecular_function | ATP binding |
B | 0005737 | cellular_component | cytoplasm |
B | 0005829 | cellular_component | cytosol |
B | 0006221 | biological_process | pyrimidine nucleotide biosynthetic process |
B | 0006225 | biological_process | UDP biosynthetic process |
B | 0016301 | molecular_function | kinase activity |
B | 0016740 | molecular_function | transferase activity |
B | 0033862 | molecular_function | UMP kinase activity |
B | 0042802 | molecular_function | identical protein binding |
B | 0044210 | biological_process | 'de novo' CTP biosynthetic process |
B | 0046940 | biological_process | nucleoside monophosphate phosphorylation |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 19 |
Details | BINDING SITE FOR RESIDUE UDP A1242 |
Chain | Residue |
A | LYS15 |
A | ASP77 |
A | GLY80 |
A | MET81 |
A | THR138 |
A | ASN140 |
A | PRO141 |
A | PHE143 |
A | THR144 |
A | THR145 |
A | HOH2048 |
A | SER17 |
A | GLY18 |
A | GLU19 |
A | GLY56 |
A | GLY57 |
A | GLY58 |
A | ARG62 |
A | GLY63 |
site_id | AC2 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE POP A1247 |
Chain | Residue |
A | ASN101 |
A | ARG103 |
A | SER124 |
A | ARG127 |
A | ARG130 |
A | HOH2023 |
A | HOH2050 |
site_id | AC3 |
Number of Residues | 21 |
Details | BINDING SITE FOR RESIDUE UDP B1242 |
Chain | Residue |
B | LYS15 |
B | SER17 |
B | GLY18 |
B | GLU19 |
B | GLY56 |
B | GLY57 |
B | GLY58 |
B | ARG62 |
B | GLY63 |
B | ASP77 |
B | GLY80 |
B | MET81 |
B | THR138 |
B | ASN140 |
B | PRO141 |
B | PHE143 |
B | THR144 |
B | THR145 |
B | HOH2029 |
B | HOH2039 |
B | HOH2040 |
site_id | AC4 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE GOL A1243 |
Chain | Residue |
A | GLN39 |
A | LYS42 |
A | GOL1244 |
B | GLU43 |
B | GLU46 |
site_id | AC5 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE GOL A1244 |
Chain | Residue |
A | GLN39 |
A | GLU46 |
A | GOL1243 |
B | GLN39 |
B | LYS42 |
site_id | AC6 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE GOL A1245 |
Chain | Residue |
A | GLY58 |
A | LEU60 |
A | PHE61 |
A | ARG62 |
A | GLY65 |
A | LEU66 |
site_id | AC7 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE GOL A1246 |
Chain | Residue |
A | HIS78 |
A | ILE108 |
A | GLY139 |
A | HOH2049 |
B | ALA112 |
B | TYR117 |
B | HOH2030 |
site_id | AC8 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE GOL B1243 |
Chain | Residue |
B | HIS96 |
B | ASN101 |
B | ARG127 |
B | HOH2041 |
B | HOH2042 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 5 |
Details | Region: {"description":"Involved in allosteric activation by GTP","evidences":[{"evidenceCode":"ECO:0000255"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI2 |
Number of Residues | 10 |
Details | Binding site: {"evidences":[{"source":"PubMed","id":"15857829","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"18945668","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"2BND","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"2BNF","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"2V4Y","evidenceCode":"ECO:0007744"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI3 |
Number of Residues | 2 |
Details | Binding site: {"evidences":[{"source":"PubMed","id":"15857829","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"2BND","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"2BNE","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"2BNF","evidenceCode":"ECO:0007744"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI4 |
Number of Residues | 2 |
Details | Binding site: {"evidences":[{"source":"PubMed","id":"15857829","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"18945668","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"2BNE","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"2BNF","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"2V4Y","evidenceCode":"ECO:0007744"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI5 |
Number of Residues | 12 |
Details | Binding site: {"evidences":[{"source":"PubMed","id":"18945668","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"2V4Y","evidenceCode":"ECO:0007744"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI6 |
Number of Residues | 14 |
Details | Binding site: {"evidences":[{"source":"PubMed","id":"15857829","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"18945668","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"2BND","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"2BNE","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"2BNF","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"2V4Y","evidenceCode":"ECO:0007744"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI7 |
Number of Residues | 6 |
Details | Binding site: {"evidences":[{"evidenceCode":"ECO:0000250"}]} |
Chain | Residue | Details |