2BND
The structure of E. coli UMP kinase in complex with UDP
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0000166 | molecular_function | nucleotide binding |
| A | 0003824 | molecular_function | catalytic activity |
| A | 0005524 | molecular_function | ATP binding |
| A | 0005737 | cellular_component | cytoplasm |
| A | 0005829 | cellular_component | cytosol |
| A | 0006221 | biological_process | pyrimidine nucleotide biosynthetic process |
| A | 0006225 | biological_process | UDP biosynthetic process |
| A | 0016301 | molecular_function | kinase activity |
| A | 0016740 | molecular_function | transferase activity |
| A | 0033862 | molecular_function | UMP kinase activity |
| A | 0042802 | molecular_function | identical protein binding |
| A | 0044210 | biological_process | 'de novo' CTP biosynthetic process |
| A | 0046940 | biological_process | nucleoside monophosphate phosphorylation |
| B | 0000166 | molecular_function | nucleotide binding |
| B | 0003824 | molecular_function | catalytic activity |
| B | 0005524 | molecular_function | ATP binding |
| B | 0005737 | cellular_component | cytoplasm |
| B | 0005829 | cellular_component | cytosol |
| B | 0006221 | biological_process | pyrimidine nucleotide biosynthetic process |
| B | 0006225 | biological_process | UDP biosynthetic process |
| B | 0016301 | molecular_function | kinase activity |
| B | 0016740 | molecular_function | transferase activity |
| B | 0033862 | molecular_function | UMP kinase activity |
| B | 0042802 | molecular_function | identical protein binding |
| B | 0044210 | biological_process | 'de novo' CTP biosynthetic process |
| B | 0046940 | biological_process | nucleoside monophosphate phosphorylation |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 19 |
| Details | BINDING SITE FOR RESIDUE UDP A1242 |
| Chain | Residue |
| A | LYS15 |
| A | ASP77 |
| A | GLY80 |
| A | MET81 |
| A | THR138 |
| A | ASN140 |
| A | PRO141 |
| A | PHE143 |
| A | THR144 |
| A | THR145 |
| A | HOH2048 |
| A | SER17 |
| A | GLY18 |
| A | GLU19 |
| A | GLY56 |
| A | GLY57 |
| A | GLY58 |
| A | ARG62 |
| A | GLY63 |
| site_id | AC2 |
| Number of Residues | 7 |
| Details | BINDING SITE FOR RESIDUE POP A1247 |
| Chain | Residue |
| A | ASN101 |
| A | ARG103 |
| A | SER124 |
| A | ARG127 |
| A | ARG130 |
| A | HOH2023 |
| A | HOH2050 |
| site_id | AC3 |
| Number of Residues | 21 |
| Details | BINDING SITE FOR RESIDUE UDP B1242 |
| Chain | Residue |
| B | LYS15 |
| B | SER17 |
| B | GLY18 |
| B | GLU19 |
| B | GLY56 |
| B | GLY57 |
| B | GLY58 |
| B | ARG62 |
| B | GLY63 |
| B | ASP77 |
| B | GLY80 |
| B | MET81 |
| B | THR138 |
| B | ASN140 |
| B | PRO141 |
| B | PHE143 |
| B | THR144 |
| B | THR145 |
| B | HOH2029 |
| B | HOH2039 |
| B | HOH2040 |
| site_id | AC4 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE GOL A1243 |
| Chain | Residue |
| A | GLN39 |
| A | LYS42 |
| A | GOL1244 |
| B | GLU43 |
| B | GLU46 |
| site_id | AC5 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE GOL A1244 |
| Chain | Residue |
| A | GLN39 |
| A | GLU46 |
| A | GOL1243 |
| B | GLN39 |
| B | LYS42 |
| site_id | AC6 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE GOL A1245 |
| Chain | Residue |
| A | GLY58 |
| A | LEU60 |
| A | PHE61 |
| A | ARG62 |
| A | GLY65 |
| A | LEU66 |
| site_id | AC7 |
| Number of Residues | 7 |
| Details | BINDING SITE FOR RESIDUE GOL A1246 |
| Chain | Residue |
| A | HIS78 |
| A | ILE108 |
| A | GLY139 |
| A | HOH2049 |
| B | ALA112 |
| B | TYR117 |
| B | HOH2030 |
| site_id | AC8 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE GOL B1243 |
| Chain | Residue |
| B | HIS96 |
| B | ASN101 |
| B | ARG127 |
| B | HOH2041 |
| B | HOH2042 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 5 |
| Details | Region: {"description":"Involved in allosteric activation by GTP","evidences":[{"evidenceCode":"ECO:0000255"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI2 |
| Number of Residues | 10 |
| Details | Binding site: {"evidences":[{"source":"PubMed","id":"15857829","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"18945668","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"2BND","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"2BNF","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"2V4Y","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI3 |
| Number of Residues | 2 |
| Details | Binding site: {"evidences":[{"source":"PubMed","id":"15857829","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"2BND","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"2BNE","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"2BNF","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI4 |
| Number of Residues | 2 |
| Details | Binding site: {"evidences":[{"source":"PubMed","id":"15857829","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"18945668","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"2BNE","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"2BNF","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"2V4Y","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI5 |
| Number of Residues | 12 |
| Details | Binding site: {"evidences":[{"source":"PubMed","id":"18945668","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"2V4Y","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI6 |
| Number of Residues | 14 |
| Details | Binding site: {"evidences":[{"source":"PubMed","id":"15857829","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"18945668","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"2BND","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"2BNE","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"2BNF","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"2V4Y","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI7 |
| Number of Residues | 6 |
| Details | Binding site: {"evidences":[{"evidenceCode":"ECO:0000250"}]} |
| Chain | Residue | Details |
