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2B5L

Crystal Structure of DDB1 In Complex with Simian Virus 5 V Protein

Functional Information from GO Data
ChainGOidnamespacecontents
A0000781cellular_componentchromosome, telomeric region
A0003676molecular_functionnucleic acid binding
A0003677molecular_functionDNA binding
A0003684molecular_functiondamaged DNA binding
A0005515molecular_functionprotein binding
A0005615cellular_componentextracellular space
A0005634cellular_componentnucleus
A0005654cellular_componentnucleoplasm
A0005730cellular_componentnucleolus
A0005737cellular_componentcytoplasm
A0006281biological_processDNA repair
A0006289biological_processnucleotide-excision repair
A0006511biological_processubiquitin-dependent protein catabolic process
A0006915biological_processapoptotic process
A0006974biological_processDNA damage response
A0007056biological_processspindle assembly involved in female meiosis
A0010498biological_processproteasomal protein catabolic process
A0016055biological_processWnt signaling pathway
A0016567biological_processprotein ubiquitination
A0019076biological_processviral release from host cell
A0030674molecular_functionprotein-macromolecule adaptor activity
A0031464cellular_componentCul4A-RING E3 ubiquitin ligase complex
A0031465cellular_componentCul4B-RING E3 ubiquitin ligase complex
A0032991cellular_componentprotein-containing complex
A0034644biological_processcellular response to UV
A0035234biological_processectopic germ cell programmed cell death
A0035861cellular_componentsite of double-strand break
A0042752biological_processregulation of circadian rhythm
A0043066biological_processnegative regulation of apoptotic process
A0043161biological_processproteasome-mediated ubiquitin-dependent protein catabolic process
A0044725biological_processepigenetic programming in the zygotic pronuclei
A0044877molecular_functionprotein-containing complex binding
A0045070biological_processpositive regulation of viral genome replication
A0045722biological_processpositive regulation of gluconeogenesis
A0045732biological_processpositive regulation of protein catabolic process
A0046726biological_processpositive regulation by virus of viral protein levels in host cell
A0048511biological_processrhythmic process
A0051093biological_processnegative regulation of developmental process
A0051702biological_processbiological process involved in interaction with symbiont
A0070062cellular_componentextracellular exosome
A0070914biological_processUV-damage excision repair
A0071987molecular_functionWD40-repeat domain binding
A0080008cellular_componentCul4-RING E3 ubiquitin ligase complex
A0097602molecular_functioncullin family protein binding
A0160072molecular_functionubiquitin ligase complex scaffold activity
A1901990biological_processregulation of mitotic cell cycle phase transition
A2000242biological_processnegative regulation of reproductive process
B0000781cellular_componentchromosome, telomeric region
B0003676molecular_functionnucleic acid binding
B0003677molecular_functionDNA binding
B0003684molecular_functiondamaged DNA binding
B0005515molecular_functionprotein binding
B0005615cellular_componentextracellular space
B0005634cellular_componentnucleus
B0005654cellular_componentnucleoplasm
B0005730cellular_componentnucleolus
B0005737cellular_componentcytoplasm
B0006281biological_processDNA repair
B0006289biological_processnucleotide-excision repair
B0006511biological_processubiquitin-dependent protein catabolic process
B0006915biological_processapoptotic process
B0006974biological_processDNA damage response
B0007056biological_processspindle assembly involved in female meiosis
B0010498biological_processproteasomal protein catabolic process
B0016055biological_processWnt signaling pathway
B0016567biological_processprotein ubiquitination
B0019076biological_processviral release from host cell
B0030674molecular_functionprotein-macromolecule adaptor activity
B0031464cellular_componentCul4A-RING E3 ubiquitin ligase complex
B0031465cellular_componentCul4B-RING E3 ubiquitin ligase complex
B0032991cellular_componentprotein-containing complex
B0034644biological_processcellular response to UV
B0035234biological_processectopic germ cell programmed cell death
B0035861cellular_componentsite of double-strand break
B0042752biological_processregulation of circadian rhythm
B0043066biological_processnegative regulation of apoptotic process
B0043161biological_processproteasome-mediated ubiquitin-dependent protein catabolic process
B0044725biological_processepigenetic programming in the zygotic pronuclei
B0044877molecular_functionprotein-containing complex binding
B0045070biological_processpositive regulation of viral genome replication
B0045722biological_processpositive regulation of gluconeogenesis
B0045732biological_processpositive regulation of protein catabolic process
B0046726biological_processpositive regulation by virus of viral protein levels in host cell
B0048511biological_processrhythmic process
B0051093biological_processnegative regulation of developmental process
B0051702biological_processbiological process involved in interaction with symbiont
B0070062cellular_componentextracellular exosome
B0070914biological_processUV-damage excision repair
B0071987molecular_functionWD40-repeat domain binding
B0080008cellular_componentCul4-RING E3 ubiquitin ligase complex
B0097602molecular_functioncullin family protein binding
B0160072molecular_functionubiquitin ligase complex scaffold activity
B1901990biological_processregulation of mitotic cell cycle phase transition
B2000242biological_processnegative regulation of reproductive process
C0003723molecular_functionRNA binding
C0005515molecular_functionprotein binding
C0019049biological_processvirus-mediated perturbation of host defense response
C0030430cellular_componenthost cell cytoplasm
C0039502biological_processsymbiont-mediated suppression of host type I interferon-mediated signaling pathway
C0039554biological_processsymbiont-mediated suppression of host cytoplasmic pattern recognition receptor signaling pathway via inhibition of MDA-5 activity
C0039563biological_processsymbiont-mediated suppression of host JAK-STAT cascade via inhibition of STAT1 activity
C0039564biological_processsymbiont-mediated suppression of host JAK-STAT cascade via inhibition of STAT2 activity
C0044068biological_processsymbiont-mediated perturbation of host cellular process
C0046872molecular_functionmetal ion binding
C1990756molecular_functionubiquitin-like ligase-substrate adaptor activity
D0003723molecular_functionRNA binding
D0005515molecular_functionprotein binding
D0019049biological_processvirus-mediated perturbation of host defense response
D0030430cellular_componenthost cell cytoplasm
D0039502biological_processsymbiont-mediated suppression of host type I interferon-mediated signaling pathway
D0039554biological_processsymbiont-mediated suppression of host cytoplasmic pattern recognition receptor signaling pathway via inhibition of MDA-5 activity
D0039563biological_processsymbiont-mediated suppression of host JAK-STAT cascade via inhibition of STAT1 activity
D0039564biological_processsymbiont-mediated suppression of host JAK-STAT cascade via inhibition of STAT2 activity
D0044068biological_processsymbiont-mediated perturbation of host cellular process
D0046872molecular_functionmetal ion binding
D1990756molecular_functionubiquitin-like ligase-substrate adaptor activity
Functional Information from PDB Data
site_idAC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN C 3001
ChainResidue
CCYS194
CCYS206
CCYS208
CCYS211

site_idAC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN C 3002
ChainResidue
CHIS171
CCYS190
CCYS215
CCYS218

site_idAC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN D 3003
ChainResidue
DCYS206
DCYS208
DCYS211
DCYS194

site_idAC4
Number of Residues3
DetailsBINDING SITE FOR RESIDUE ZN D 3004
ChainResidue
DCYS190
DCYS215
DCYS218

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsMOD_RES: N-acetylserine => ECO:0007744|PubMed:19413330
ChainResidueDetails
ASER2
DCYS190
DCYS194
DCYS206
DCYS208
DCYS211
DCYS215
DCYS218
BSER2
CCYS194
CCYS206
CCYS208
CCYS211
CCYS215
CCYS218
DHIS171

site_idSWS_FT_FI2
Number of Residues2
DetailsMOD_RES: N6-acetyllysine => ECO:0007744|PubMed:19608861
ChainResidueDetails
ALYS1067
BLYS1067

site_idSWS_FT_FI3
Number of Residues2
DetailsMOD_RES: Phosphothreonine => ECO:0000250|UniProtKB:Q9ESW0
ChainResidueDetails
ATHR1125
BTHR1125

site_idSWS_FT_FI4
Number of Residues4
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2) => ECO:0007744|PubMed:28112733
ChainResidueDetails
ALYS1121
BLYS1121

227561

PDB entries from 2024-11-20

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