2AK3
THE THREE-DIMENSIONAL STRUCTURE OF THE COMPLEX BETWEEN MITOCHONDRIAL MATRIX ADENYLATE KINASE AND ITS SUBSTRATE AMP AT 1.85 ANGSTROMS RESOLUTION
Replaces: 1AK3Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0000166 | molecular_function | nucleotide binding |
A | 0004017 | molecular_function | adenylate kinase activity |
A | 0005524 | molecular_function | ATP binding |
A | 0005525 | molecular_function | GTP binding |
A | 0005737 | cellular_component | cytoplasm |
A | 0005739 | cellular_component | mitochondrion |
A | 0005759 | cellular_component | mitochondrial matrix |
A | 0006139 | biological_process | nucleobase-containing compound metabolic process |
A | 0006172 | biological_process | ADP biosynthetic process |
A | 0009142 | biological_process | nucleoside triphosphate biosynthetic process |
A | 0016301 | molecular_function | kinase activity |
A | 0016310 | biological_process | phosphorylation |
A | 0016740 | molecular_function | transferase activity |
A | 0016776 | molecular_function | phosphotransferase activity, phosphate group as acceptor |
A | 0019205 | molecular_function | nucleobase-containing compound kinase activity |
A | 0043231 | cellular_component | intracellular membrane-bounded organelle |
A | 0046033 | biological_process | AMP metabolic process |
A | 0046039 | biological_process | GTP metabolic process |
A | 0046041 | biological_process | ITP metabolic process |
A | 0046051 | biological_process | UTP metabolic process |
A | 0046899 | molecular_function | nucleoside triphosphate adenylate kinase activity |
A | 0046940 | biological_process | nucleoside monophosphate phosphorylation |
B | 0000166 | molecular_function | nucleotide binding |
B | 0004017 | molecular_function | adenylate kinase activity |
B | 0005524 | molecular_function | ATP binding |
B | 0005525 | molecular_function | GTP binding |
B | 0005737 | cellular_component | cytoplasm |
B | 0005739 | cellular_component | mitochondrion |
B | 0005759 | cellular_component | mitochondrial matrix |
B | 0006139 | biological_process | nucleobase-containing compound metabolic process |
B | 0006172 | biological_process | ADP biosynthetic process |
B | 0009142 | biological_process | nucleoside triphosphate biosynthetic process |
B | 0016301 | molecular_function | kinase activity |
B | 0016310 | biological_process | phosphorylation |
B | 0016740 | molecular_function | transferase activity |
B | 0016776 | molecular_function | phosphotransferase activity, phosphate group as acceptor |
B | 0019205 | molecular_function | nucleobase-containing compound kinase activity |
B | 0043231 | cellular_component | intracellular membrane-bounded organelle |
B | 0046033 | biological_process | AMP metabolic process |
B | 0046039 | biological_process | GTP metabolic process |
B | 0046041 | biological_process | ITP metabolic process |
B | 0046051 | biological_process | UTP metabolic process |
B | 0046899 | molecular_function | nucleoside triphosphate adenylate kinase activity |
B | 0046940 | biological_process | nucleoside monophosphate phosphorylation |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE SO4 A 227 |
Chain | Residue |
A | ALA13 |
A | GLY15 |
A | SER16 |
A | GLY17 |
A | LYS18 |
A | GLY19 |
A | HOH324 |
site_id | AC2 |
Number of Residues | 8 |
Details | BINDING SITE FOR RESIDUE SO4 B 227 |
Chain | Residue |
B | GLY17 |
B | LYS18 |
B | GLY19 |
B | HOH332 |
B | HOH392 |
B | HOH395 |
B | GLY15 |
B | SER16 |
site_id | AC3 |
Number of Residues | 14 |
Details | BINDING SITE FOR RESIDUE AMP A 226 |
Chain | Residue |
A | SER36 |
A | LEU40 |
A | ARG41 |
A | ILE58 |
A | LYS62 |
A | LEU63 |
A | ILE64 |
A | MET69 |
A | GLY89 |
A | ARG92 |
A | GLN96 |
A | HOH338 |
A | HOH374 |
A | HOH409 |
site_id | AC4 |
Number of Residues | 15 |
Details | BINDING SITE FOR RESIDUE AMP B 226 |
Chain | Residue |
B | SER36 |
B | GLY37 |
B | LEU40 |
B | ARG41 |
B | ILE58 |
B | LYS62 |
B | LEU63 |
B | ILE64 |
B | MET69 |
B | GLY89 |
B | ARG92 |
B | GLN96 |
B | HOH293 |
B | HOH328 |
B | HOH330 |
Functional Information from PROSITE/UniProt
site_id | PS00113 |
Number of Residues | 12 |
Details | ADENYLATE_KINASE Adenylate kinase signature. WLLDGFPRtlpQ |
Chain | Residue | Details |
A | TRP85-GLN96 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 16 |
Details | BINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_03169 |
Chain | Residue | Details |
A | SER16 | |
B | ASP42 | |
B | PHE90 | |
B | TRP127 | |
B | TYR136 | |
B | GLU160 | |
B | LEU171 | |
B | ASN200 | |
A | ASP42 | |
A | PHE90 | |
A | TRP127 | |
A | TYR136 | |
A | GLU160 | |
A | LEU171 | |
A | ASN200 | |
B | SER16 |
site_id | SWS_FT_FI2 |
Number of Residues | 6 |
Details | BINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_03169, ECO:0000269|PubMed:1994037 |
Chain | Residue | Details |
A | GLY37 | |
A | LEU63 | |
A | ALA97 | |
B | GLY37 | |
B | LEU63 | |
B | ALA97 |
site_id | SWS_FT_FI3 |
Number of Residues | 4 |
Details | MOD_RES: N6-succinyllysine => ECO:0000250|UniProtKB:Q9WTP7 |
Chain | Residue | Details |
A | GLY19 | |
A | THR56 | |
B | GLY19 | |
B | THR56 |
site_id | SWS_FT_FI4 |
Number of Residues | 10 |
Details | MOD_RES: N6-succinyllysine; alternate => ECO:0000250|UniProtKB:Q9WTP7 |
Chain | Residue | Details |
A | HIS28 | |
B | LYS188 | |
A | LEU63 | |
A | ASN79 | |
A | ALA173 | |
A | LYS188 | |
B | HIS28 | |
B | LEU63 | |
B | ASN79 | |
B | ALA173 |
site_id | SWS_FT_FI5 |
Number of Residues | 4 |
Details | MOD_RES: N6-acetyllysine => ECO:0000250|UniProtKB:Q9WTP7 |
Chain | Residue | Details |
A | HIS33 | |
A | ILE202 | |
B | HIS33 | |
B | ILE202 |
site_id | SWS_FT_FI6 |
Number of Residues | 2 |
Details | MOD_RES: Phosphoserine => ECO:0000250|UniProtKB:Q9WTP7 |
Chain | Residue | Details |
A | SER36 | |
B | SER36 |