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2AGP

Fidelity of Dpo4: effect of metal ions, nucleotide selection and pyrophosphorolysis

Functional Information from GO Data
ChainGOidnamespacecontents
A0000287molecular_functionmagnesium ion binding
A0003677molecular_functionDNA binding
A0003684molecular_functiondamaged DNA binding
A0003887molecular_functionDNA-directed DNA polymerase activity
A0005737cellular_componentcytoplasm
A0006260biological_processDNA replication
A0006261biological_processDNA-templated DNA replication
A0006281biological_processDNA repair
A0006974biological_processDNA damage response
A0042276biological_processerror-prone translesion synthesis
A0046872molecular_functionmetal ion binding
B0000287molecular_functionmagnesium ion binding
B0003677molecular_functionDNA binding
B0003684molecular_functiondamaged DNA binding
B0003887molecular_functionDNA-directed DNA polymerase activity
B0005737cellular_componentcytoplasm
B0006260biological_processDNA replication
B0006261biological_processDNA-templated DNA replication
B0006281biological_processDNA repair
B0006974biological_processDNA damage response
B0042276biological_processerror-prone translesion synthesis
B0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE CA A 402
ChainResidue
AASP7
APHE8
AASP105
ADGT401
AMG403

site_idAC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG A 403
ChainResidue
CDOC1813
AASP105
AGLU106
ADGT401
ACA402

site_idAC3
Number of Residues7
DetailsBINDING SITE FOR RESIDUE MG A 404
ChainResidue
AALA181
AILE186
AHOH503
AHOH562
AHOH851
AHOH1044
AHOH1229

site_idAC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE CA B 402
ChainResidue
BASP7
BPHE8
BASP105
BDGT501

site_idAC5
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG B 404
ChainResidue
BALA181
BILE186
BHOH704
BHOH845
BHOH1146

site_idAC6
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG B 407
ChainResidue
BASP294
BHOH587
BHOH619
EHOH593
EDG1809
EDA1810

site_idAC7
Number of Residues4
DetailsBINDING SITE FOR RESIDUE MG B 408
ChainResidue
BASP105
BGLU106
BDGT501
BHOH580

site_idAC8
Number of Residues25
DetailsBINDING SITE FOR RESIDUE DGT A 401
ChainResidue
AASP7
ATYR10
APHE11
ATYR12
AALA44
ATHR45
AARG51
AALA57
AMET76
AASP105
ALYS159
ACA402
AMG403
AHOH528
AHOH738
AHOH797
AHOH819
AHOH920
AHOH1160
AHOH1161
AHOH1168
CHOH1240
CDOC1813
DDT1905
DDG1906

site_idAC9
Number of Residues23
DetailsBINDING SITE FOR RESIDUE DGT B 501
ChainResidue
BASP7
BTYR10
BPHE11
BTYR12
BALA44
BTHR45
BARG51
BASP105
BLYS159
BCA402
BMG408
BHOH580
BHOH585
BHOH648
BHOH788
BHOH862
BHOH966
BHOH1043
BHOH1057
BHOH1067
BHOH1151
FHOH505
FDT1905

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsACT_SITE:
ChainResidueDetails
AGLU106
BGLU106

site_idSWS_FT_FI2
Number of Residues4
DetailsBINDING:
ChainResidueDetails
AASP7
AASP105
BASP7
BASP105

site_idSWS_FT_FI3
Number of Residues2
DetailsSITE: Substrate discrimination
ChainResidueDetails
ATYR12
BTYR12

219140

PDB entries from 2024-05-01

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