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2A8Y

Crystal structure of 5'-deoxy-5'methylthioadenosine phosphorylase complexed with 5'-deoxy-5'methylthioadenosine and sulfate

Functional Information from GO Data
ChainGOidnamespacecontents
A0003824molecular_functioncatalytic activity
A0005829cellular_componentcytosol
A0006166biological_processpurine ribonucleoside salvage
A0009116biological_processnucleoside metabolic process
A0016740molecular_functiontransferase activity
A0016757molecular_functionglycosyltransferase activity
A0016763molecular_functionpentosyltransferase activity
A0017061molecular_functionS-methyl-5-thioadenosine phosphorylase activity
A0019509biological_processL-methionine salvage from methylthioadenosine
B0003824molecular_functioncatalytic activity
B0005829cellular_componentcytosol
B0006166biological_processpurine ribonucleoside salvage
B0009116biological_processnucleoside metabolic process
B0016740molecular_functiontransferase activity
B0016757molecular_functionglycosyltransferase activity
B0016763molecular_functionpentosyltransferase activity
B0017061molecular_functionS-methyl-5-thioadenosine phosphorylase activity
B0019509biological_processL-methionine salvage from methylthioadenosine
C0003824molecular_functioncatalytic activity
C0005829cellular_componentcytosol
C0006166biological_processpurine ribonucleoside salvage
C0009116biological_processnucleoside metabolic process
C0016740molecular_functiontransferase activity
C0016757molecular_functionglycosyltransferase activity
C0016763molecular_functionpentosyltransferase activity
C0017061molecular_functionS-methyl-5-thioadenosine phosphorylase activity
C0019509biological_processL-methionine salvage from methylthioadenosine
D0003824molecular_functioncatalytic activity
D0005829cellular_componentcytosol
D0006166biological_processpurine ribonucleoside salvage
D0009116biological_processnucleoside metabolic process
D0016740molecular_functiontransferase activity
D0016757molecular_functionglycosyltransferase activity
D0016763molecular_functionpentosyltransferase activity
D0017061molecular_functionS-methyl-5-thioadenosine phosphorylase activity
D0019509biological_processL-methionine salvage from methylthioadenosine
E0003824molecular_functioncatalytic activity
E0005829cellular_componentcytosol
E0006166biological_processpurine ribonucleoside salvage
E0009116biological_processnucleoside metabolic process
E0016740molecular_functiontransferase activity
E0016757molecular_functionglycosyltransferase activity
E0016763molecular_functionpentosyltransferase activity
E0017061molecular_functionS-methyl-5-thioadenosine phosphorylase activity
E0019509biological_processL-methionine salvage from methylthioadenosine
F0003824molecular_functioncatalytic activity
F0005829cellular_componentcytosol
F0006166biological_processpurine ribonucleoside salvage
F0009116biological_processnucleoside metabolic process
F0016740molecular_functiontransferase activity
F0016757molecular_functionglycosyltransferase activity
F0016763molecular_functionpentosyltransferase activity
F0017061molecular_functionS-methyl-5-thioadenosine phosphorylase activity
F0019509biological_processL-methionine salvage from methylthioadenosine
G0003824molecular_functioncatalytic activity
G0005829cellular_componentcytosol
G0006166biological_processpurine ribonucleoside salvage
G0009116biological_processnucleoside metabolic process
G0016740molecular_functiontransferase activity
G0016757molecular_functionglycosyltransferase activity
G0016763molecular_functionpentosyltransferase activity
G0017061molecular_functionS-methyl-5-thioadenosine phosphorylase activity
G0019509biological_processL-methionine salvage from methylthioadenosine
H0003824molecular_functioncatalytic activity
H0005829cellular_componentcytosol
H0006166biological_processpurine ribonucleoside salvage
H0009116biological_processnucleoside metabolic process
H0016740molecular_functiontransferase activity
H0016757molecular_functionglycosyltransferase activity
H0016763molecular_functionpentosyltransferase activity
H0017061molecular_functionS-methyl-5-thioadenosine phosphorylase activity
H0019509biological_processL-methionine salvage from methylthioadenosine
I0003824molecular_functioncatalytic activity
I0005829cellular_componentcytosol
I0006166biological_processpurine ribonucleoside salvage
I0009116biological_processnucleoside metabolic process
I0016740molecular_functiontransferase activity
I0016757molecular_functionglycosyltransferase activity
I0016763molecular_functionpentosyltransferase activity
I0017061molecular_functionS-methyl-5-thioadenosine phosphorylase activity
I0019509biological_processL-methionine salvage from methylthioadenosine
J0003824molecular_functioncatalytic activity
J0005829cellular_componentcytosol
J0006166biological_processpurine ribonucleoside salvage
J0009116biological_processnucleoside metabolic process
J0016740molecular_functiontransferase activity
J0016757molecular_functionglycosyltransferase activity
J0016763molecular_functionpentosyltransferase activity
J0017061molecular_functionS-methyl-5-thioadenosine phosphorylase activity
J0019509biological_processL-methionine salvage from methylthioadenosine
K0003824molecular_functioncatalytic activity
K0005829cellular_componentcytosol
K0006166biological_processpurine ribonucleoside salvage
K0009116biological_processnucleoside metabolic process
K0016740molecular_functiontransferase activity
K0016757molecular_functionglycosyltransferase activity
K0016763molecular_functionpentosyltransferase activity
K0017061molecular_functionS-methyl-5-thioadenosine phosphorylase activity
K0019509biological_processL-methionine salvage from methylthioadenosine
L0003824molecular_functioncatalytic activity
L0005829cellular_componentcytosol
L0006166biological_processpurine ribonucleoside salvage
L0009116biological_processnucleoside metabolic process
L0016740molecular_functiontransferase activity
L0016757molecular_functionglycosyltransferase activity
L0016763molecular_functionpentosyltransferase activity
L0017061molecular_functionS-methyl-5-thioadenosine phosphorylase activity
L0019509biological_processL-methionine salvage from methylthioadenosine
Functional Information from PDB Data
site_idAC1
Number of Residues9
DetailsBINDING SITE FOR RESIDUE SO4 A 4000
ChainResidue
AGLY15
ASER16
AARG58
AHIS59
ASER91
AALA92
ATHR191
AMTA4003
AHOH4022

site_idAC2
Number of Residues9
DetailsBINDING SITE FOR RESIDUE SO4 A 4001
ChainResidue
AGLN38
AARG64
AHOH4048
AHOH4060
AHOH4201
AHOH4245
AHOH4248
JGLN38
JARG64

site_idAC3
Number of Residues9
DetailsBINDING SITE FOR RESIDUE SO4 B 4004
ChainResidue
BGLY15
BSER16
BARG58
BHIS59
BSER91
BALA92
BTHR191
BMTA4006
BHOH4138

site_idAC4
Number of Residues8
DetailsBINDING SITE FOR RESIDUE SO4 L 4005
ChainResidue
BGLN38
BARG64
BHOH4054
LGLN38
LARG64
LHOH4105
LHOH4210
LHOH4216

site_idAC5
Number of Residues9
DetailsBINDING SITE FOR RESIDUE SO4 C 4007
ChainResidue
CGLY15
CSER16
CARG58
CHIS59
CSER91
CALA92
CTHR191
CMTA4009
CHOH4139

site_idAC6
Number of Residues9
DetailsBINDING SITE FOR RESIDUE SO4 K 4008
ChainResidue
CGLN38
CARG64
KGLN38
KARG64
KHOH4082
KHOH4085
KHOH4229
KHOH4260
KHOH4270

site_idAC7
Number of Residues9
DetailsBINDING SITE FOR RESIDUE SO4 D 4010
ChainResidue
DGLY15
DSER16
DARG58
DHIS59
DSER91
DALA92
DTHR191
DMTA4012
DHOH4134

site_idAC8
Number of Residues8
DetailsBINDING SITE FOR RESIDUE SO4 D 4011
ChainResidue
DGLN38
DARG64
DHOH4073
DHOH4195
DHOH4266
GGLN38
GARG64
GHOH4076

site_idAC9
Number of Residues9
DetailsBINDING SITE FOR RESIDUE SO4 E 4013
ChainResidue
EGLY15
ESER16
EARG58
EHIS59
ESER91
EALA92
ETHR191
EMTA4015
EHOH4146

site_idBC1
Number of Residues8
DetailsBINDING SITE FOR RESIDUE SO4 I 4014
ChainResidue
EGLN38
EARG64
EHOH4072
IGLN38
IARG64
IHOH4078
IHOH4251
IHOH4266

site_idBC2
Number of Residues9
DetailsBINDING SITE FOR RESIDUE SO4 F 4016
ChainResidue
FGLY15
FSER16
FARG58
FHIS59
FSER91
FALA92
FTHR191
FMTA4018
FHOH4146

site_idBC3
Number of Residues10
DetailsBINDING SITE FOR RESIDUE SO4 H 4017
ChainResidue
HARG64
HHOH4039
HHOH4062
HHOH4079
HHOH4177
HHOH4242
HHOH4261
FGLN38
FARG64
HGLN38

site_idBC4
Number of Residues9
DetailsBINDING SITE FOR RESIDUE SO4 G 4019
ChainResidue
GGLY15
GSER16
GARG58
GHIS59
GSER91
GALA92
GTHR191
GMTA4021
GHOH4147

site_idBC5
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SO4 G 4020
ChainResidue
AARG180
GLEU96
GARG97
GMET98
GARG180
GHOH4238

site_idBC6
Number of Residues9
DetailsBINDING SITE FOR RESIDUE SO4 H 4022
ChainResidue
HGLY15
HSER16
HARG58
HHIS59
HSER91
HALA92
HTHR191
HMTA4024
HHOH4142

site_idBC7
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SO4 H 4023
ChainResidue
CARG97
CMET98
CARG180
HARG97
HHOH4166
HHOH4192

site_idBC8
Number of Residues9
DetailsBINDING SITE FOR RESIDUE SO4 I 4025
ChainResidue
IGLY15
ISER16
IARG58
IHIS59
ISER91
IALA92
ITHR191
IMTA4027
IHOH4163

site_idBC9
Number of Residues8
DetailsBINDING SITE FOR RESIDUE SO4 I 4026
ChainResidue
BLEU96
BARG97
BMET98
BARG180
BHOH4060
BHOH4119
IHOH4198
IHOH4257

site_idCC1
Number of Residues9
DetailsBINDING SITE FOR RESIDUE SO4 J 4028
ChainResidue
JGLY15
JSER16
JARG58
JHIS59
JSER91
JALA92
JTHR191
JMTA4030
JHOH4054

site_idCC2
Number of Residues8
DetailsBINDING SITE FOR RESIDUE SO4 J 4029
ChainResidue
DARG97
DHOH4166
DHOH4200
JLEU96
JARG97
JMET98
JARG180
JHOH4245

site_idCC3
Number of Residues9
DetailsBINDING SITE FOR RESIDUE SO4 K 4031
ChainResidue
KGLY15
KSER16
KARG58
KHIS59
KSER91
KALA92
KTHR191
KMTA4033
KHOH4052

site_idCC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 K 4032
ChainResidue
FLEU96
FARG97
FMET98
FHOH4244
KARG180

site_idCC5
Number of Residues9
DetailsBINDING SITE FOR RESIDUE SO4 L 4034
ChainResidue
LGLY15
LSER16
LARG58
LHIS59
LSER91
LALA92
LTHR191
LMTA4036
LHOH4166

site_idCC6
Number of Residues10
DetailsBINDING SITE FOR RESIDUE SO4 L 4035
ChainResidue
EHOH4070
EHOH4248
LLEU96
LARG97
LMET98
LARG180
LHOH4093
LHOH4156
LHOH4276
LHOH4314

site_idCC7
Number of Residues16
DetailsBINDING SITE FOR RESIDUE MTA A 4003
ChainResidue
ASER16
AHIS59
APRO67
AALA92
AVAL93
AGLY94
APHE170
AILE188
AGLY189
AMET190
AASP214
AASP216
ASO44000
AHOH4007
BHIS130
BHOH4021

site_idCC8
Number of Residues16
DetailsBINDING SITE FOR RESIDUE MTA B 4006
ChainResidue
BSER16
BHIS59
BPRO67
BALA92
BVAL93
BGLY94
BPHE170
BILE188
BGLY189
BMET190
BASP214
BASP216
BSO44004
BHOH4012
CHIS130
CHOH4016

site_idCC9
Number of Residues16
DetailsBINDING SITE FOR RESIDUE MTA C 4009
ChainResidue
AHIS130
AHOH4014
CSER16
CHIS59
CPRO67
CALA92
CVAL93
CGLY94
CPHE170
CILE188
CGLY189
CMET190
CASP214
CASP216
CSO44007
CHOH4017

site_idDC1
Number of Residues16
DetailsBINDING SITE FOR RESIDUE MTA D 4012
ChainResidue
DSER16
DHIS59
DPRO67
DALA92
DVAL93
DGLY94
DPHE170
DILE188
DGLY189
DMET190
DASP214
DASP216
DSO44010
DHOH4019
DHOH4021
EHIS130

site_idDC2
Number of Residues16
DetailsBINDING SITE FOR RESIDUE MTA E 4015
ChainResidue
ESER16
EHIS59
EPRO67
EALA92
EVAL93
EGLY94
EPHE170
EILE188
EGLY189
EMET190
EASP214
EASP216
ESO44013
EHOH4019
FHIS130
FHOH4022

site_idDC3
Number of Residues16
DetailsBINDING SITE FOR RESIDUE MTA F 4018
ChainResidue
DHIS130
DHOH4023
FSER16
FHIS59
FPRO67
FALA92
FVAL93
FGLY94
FPHE170
FILE188
FGLY189
FMET190
FASP214
FASP216
FSO44016
FHOH4028

site_idDC4
Number of Residues16
DetailsBINDING SITE FOR RESIDUE MTA G 4021
ChainResidue
GSER16
GHIS59
GPRO67
GALA92
GVAL93
GGLY94
GPHE170
GILE188
GGLY189
GMET190
GASP214
GASP216
GSO44019
GHOH4026
HHIS130
HHOH4037

site_idDC5
Number of Residues16
DetailsBINDING SITE FOR RESIDUE MTA H 4024
ChainResidue
HSER16
HHIS59
HPRO67
HALA92
HVAL93
HGLY94
HPHE170
HILE188
HGLY189
HMET190
HASP214
HASP216
HSO44022
HHOH4034
IHIS130
IHOH4035

site_idDC6
Number of Residues17
DetailsBINDING SITE FOR RESIDUE MTA I 4027
ChainResidue
GHIS130
ISER16
IHIS59
IPRO67
IALA92
IVAL93
IGLY94
IPHE170
IILE188
IGLY189
IMET190
IASP214
IASP216
IVAL228
ISO44025
IHOH4032
IHOH4037

site_idDC7
Number of Residues16
DetailsBINDING SITE FOR RESIDUE MTA J 4030
ChainResidue
JSER16
JHIS59
JPRO67
JALA92
JVAL93
JGLY94
JPHE170
JILE188
JGLY189
JMET190
JASP214
JASP216
JSO44028
JHOH4036
KHIS130
KHOH4043

site_idDC8
Number of Residues16
DetailsBINDING SITE FOR RESIDUE MTA K 4033
ChainResidue
KSER16
KHIS59
KPRO67
KALA92
KVAL93
KGLY94
KPHE170
KILE188
KGLY189
KMET190
KASP214
KASP216
KSO44031
KHOH4039
KHOH4040
LHIS130

site_idDC9
Number of Residues16
DetailsBINDING SITE FOR RESIDUE MTA L 4036
ChainResidue
JHIS130
JHOH4037
LSER16
LHIS59
LPRO67
LALA92
LVAL93
LGLY94
LPHE170
LILE188
LGLY189
LMET190
LASP214
LASP216
LSO44034
LHOH4040

Functional Information from PROSITE/UniProt
site_idPS01240
Number of Residues41
DetailsPNP_MTAP_2 Purine and other phosphorylases family 2 signature. LprhGrgHrIpphkInyrAn.IwAlkelGvrw.VIsvSAvGSL
ChainResidueDetails
ALEU56-LEU96

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues84
DetailsBinding site: {"evidences":[{"source":"HAMAP-Rule","id":"MF_01963","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues24
DetailsSite: {"description":"Important for substrate specificity","evidences":[{"source":"HAMAP-Rule","id":"MF_01963","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

Catalytic Information from CSA
site_idCSA1
Number of Residues2
DetailsAnnotated By Reference To The Literature 1cg6
ChainResidueDetails
AASP216
AASP214

site_idCSA2
Number of Residues2
DetailsAnnotated By Reference To The Literature 1cg6
ChainResidueDetails
BASP216
BASP214

site_idCSA3
Number of Residues2
DetailsAnnotated By Reference To The Literature 1cg6
ChainResidueDetails
CASP216
CASP214

site_idCSA4
Number of Residues2
DetailsAnnotated By Reference To The Literature 1cg6
ChainResidueDetails
DASP216
DASP214

site_idCSA5
Number of Residues2
DetailsAnnotated By Reference To The Literature 1cg6
ChainResidueDetails
EASP216
EASP214

site_idCSA6
Number of Residues2
DetailsAnnotated By Reference To The Literature 1cg6
ChainResidueDetails
FASP216
FASP214

site_idCSA7
Number of Residues2
DetailsAnnotated By Reference To The Literature 1cg6
ChainResidueDetails
GASP216
GASP214

site_idCSA8
Number of Residues2
DetailsAnnotated By Reference To The Literature 1cg6
ChainResidueDetails
HASP216
HASP214

site_idCSA9
Number of Residues2
DetailsAnnotated By Reference To The Literature 1cg6
ChainResidueDetails
IASP216
IASP214

site_idCSA10
Number of Residues2
DetailsAnnotated By Reference To The Literature 1cg6
ChainResidueDetails
JASP216
JASP214

site_idCSA11
Number of Residues2
DetailsAnnotated By Reference To The Literature 1cg6
ChainResidueDetails
KASP216
KASP214

site_idCSA12
Number of Residues2
DetailsAnnotated By Reference To The Literature 1cg6
ChainResidueDetails
LASP216
LASP214

245011

PDB entries from 2025-11-19

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