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2A8Y

Crystal structure of 5'-deoxy-5'methylthioadenosine phosphorylase complexed with 5'-deoxy-5'methylthioadenosine and sulfate

Functional Information from GO Data
ChainGOidnamespacecontents
A0003824molecular_functioncatalytic activity
A0005829cellular_componentcytosol
A0006166biological_processpurine ribonucleoside salvage
A0009116biological_processnucleoside metabolic process
A0016757molecular_functionglycosyltransferase activity
A0016763molecular_functionpentosyltransferase activity
A0017061molecular_functionS-methyl-5-thioadenosine phosphorylase activity
A0019509biological_processL-methionine salvage from methylthioadenosine
B0003824molecular_functioncatalytic activity
B0005829cellular_componentcytosol
B0006166biological_processpurine ribonucleoside salvage
B0009116biological_processnucleoside metabolic process
B0016757molecular_functionglycosyltransferase activity
B0016763molecular_functionpentosyltransferase activity
B0017061molecular_functionS-methyl-5-thioadenosine phosphorylase activity
B0019509biological_processL-methionine salvage from methylthioadenosine
C0003824molecular_functioncatalytic activity
C0005829cellular_componentcytosol
C0006166biological_processpurine ribonucleoside salvage
C0009116biological_processnucleoside metabolic process
C0016757molecular_functionglycosyltransferase activity
C0016763molecular_functionpentosyltransferase activity
C0017061molecular_functionS-methyl-5-thioadenosine phosphorylase activity
C0019509biological_processL-methionine salvage from methylthioadenosine
D0003824molecular_functioncatalytic activity
D0005829cellular_componentcytosol
D0006166biological_processpurine ribonucleoside salvage
D0009116biological_processnucleoside metabolic process
D0016757molecular_functionglycosyltransferase activity
D0016763molecular_functionpentosyltransferase activity
D0017061molecular_functionS-methyl-5-thioadenosine phosphorylase activity
D0019509biological_processL-methionine salvage from methylthioadenosine
E0003824molecular_functioncatalytic activity
E0005829cellular_componentcytosol
E0006166biological_processpurine ribonucleoside salvage
E0009116biological_processnucleoside metabolic process
E0016757molecular_functionglycosyltransferase activity
E0016763molecular_functionpentosyltransferase activity
E0017061molecular_functionS-methyl-5-thioadenosine phosphorylase activity
E0019509biological_processL-methionine salvage from methylthioadenosine
F0003824molecular_functioncatalytic activity
F0005829cellular_componentcytosol
F0006166biological_processpurine ribonucleoside salvage
F0009116biological_processnucleoside metabolic process
F0016757molecular_functionglycosyltransferase activity
F0016763molecular_functionpentosyltransferase activity
F0017061molecular_functionS-methyl-5-thioadenosine phosphorylase activity
F0019509biological_processL-methionine salvage from methylthioadenosine
G0003824molecular_functioncatalytic activity
G0005829cellular_componentcytosol
G0006166biological_processpurine ribonucleoside salvage
G0009116biological_processnucleoside metabolic process
G0016757molecular_functionglycosyltransferase activity
G0016763molecular_functionpentosyltransferase activity
G0017061molecular_functionS-methyl-5-thioadenosine phosphorylase activity
G0019509biological_processL-methionine salvage from methylthioadenosine
H0003824molecular_functioncatalytic activity
H0005829cellular_componentcytosol
H0006166biological_processpurine ribonucleoside salvage
H0009116biological_processnucleoside metabolic process
H0016757molecular_functionglycosyltransferase activity
H0016763molecular_functionpentosyltransferase activity
H0017061molecular_functionS-methyl-5-thioadenosine phosphorylase activity
H0019509biological_processL-methionine salvage from methylthioadenosine
I0003824molecular_functioncatalytic activity
I0005829cellular_componentcytosol
I0006166biological_processpurine ribonucleoside salvage
I0009116biological_processnucleoside metabolic process
I0016757molecular_functionglycosyltransferase activity
I0016763molecular_functionpentosyltransferase activity
I0017061molecular_functionS-methyl-5-thioadenosine phosphorylase activity
I0019509biological_processL-methionine salvage from methylthioadenosine
J0003824molecular_functioncatalytic activity
J0005829cellular_componentcytosol
J0006166biological_processpurine ribonucleoside salvage
J0009116biological_processnucleoside metabolic process
J0016757molecular_functionglycosyltransferase activity
J0016763molecular_functionpentosyltransferase activity
J0017061molecular_functionS-methyl-5-thioadenosine phosphorylase activity
J0019509biological_processL-methionine salvage from methylthioadenosine
K0003824molecular_functioncatalytic activity
K0005829cellular_componentcytosol
K0006166biological_processpurine ribonucleoside salvage
K0009116biological_processnucleoside metabolic process
K0016757molecular_functionglycosyltransferase activity
K0016763molecular_functionpentosyltransferase activity
K0017061molecular_functionS-methyl-5-thioadenosine phosphorylase activity
K0019509biological_processL-methionine salvage from methylthioadenosine
L0003824molecular_functioncatalytic activity
L0005829cellular_componentcytosol
L0006166biological_processpurine ribonucleoside salvage
L0009116biological_processnucleoside metabolic process
L0016757molecular_functionglycosyltransferase activity
L0016763molecular_functionpentosyltransferase activity
L0017061molecular_functionS-methyl-5-thioadenosine phosphorylase activity
L0019509biological_processL-methionine salvage from methylthioadenosine
Functional Information from PDB Data
site_idAC1
Number of Residues9
DetailsBINDING SITE FOR RESIDUE SO4 A 4000
ChainResidue
AGLY15
ASER16
AARG58
AHIS59
ASER91
AALA92
ATHR191
AMTA4003
AHOH4022

site_idAC2
Number of Residues9
DetailsBINDING SITE FOR RESIDUE SO4 A 4001
ChainResidue
AGLN38
AARG64
AHOH4048
AHOH4060
AHOH4201
AHOH4245
AHOH4248
JGLN38
JARG64

site_idAC3
Number of Residues9
DetailsBINDING SITE FOR RESIDUE SO4 B 4004
ChainResidue
BGLY15
BSER16
BARG58
BHIS59
BSER91
BALA92
BTHR191
BMTA4006
BHOH4138

site_idAC4
Number of Residues8
DetailsBINDING SITE FOR RESIDUE SO4 L 4005
ChainResidue
BGLN38
BARG64
BHOH4054
LGLN38
LARG64
LHOH4105
LHOH4210
LHOH4216

site_idAC5
Number of Residues9
DetailsBINDING SITE FOR RESIDUE SO4 C 4007
ChainResidue
CGLY15
CSER16
CARG58
CHIS59
CSER91
CALA92
CTHR191
CMTA4009
CHOH4139

site_idAC6
Number of Residues9
DetailsBINDING SITE FOR RESIDUE SO4 K 4008
ChainResidue
CGLN38
CARG64
KGLN38
KARG64
KHOH4082
KHOH4085
KHOH4229
KHOH4260
KHOH4270

site_idAC7
Number of Residues9
DetailsBINDING SITE FOR RESIDUE SO4 D 4010
ChainResidue
DGLY15
DSER16
DARG58
DHIS59
DSER91
DALA92
DTHR191
DMTA4012
DHOH4134

site_idAC8
Number of Residues8
DetailsBINDING SITE FOR RESIDUE SO4 D 4011
ChainResidue
DGLN38
DARG64
DHOH4073
DHOH4195
DHOH4266
GGLN38
GARG64
GHOH4076

site_idAC9
Number of Residues9
DetailsBINDING SITE FOR RESIDUE SO4 E 4013
ChainResidue
EGLY15
ESER16
EARG58
EHIS59
ESER91
EALA92
ETHR191
EMTA4015
EHOH4146

site_idBC1
Number of Residues8
DetailsBINDING SITE FOR RESIDUE SO4 I 4014
ChainResidue
EGLN38
EARG64
EHOH4072
IGLN38
IARG64
IHOH4078
IHOH4251
IHOH4266

site_idBC2
Number of Residues9
DetailsBINDING SITE FOR RESIDUE SO4 F 4016
ChainResidue
FGLY15
FSER16
FARG58
FHIS59
FSER91
FALA92
FTHR191
FMTA4018
FHOH4146

site_idBC3
Number of Residues10
DetailsBINDING SITE FOR RESIDUE SO4 H 4017
ChainResidue
HARG64
HHOH4039
HHOH4062
HHOH4079
HHOH4177
HHOH4242
HHOH4261
FGLN38
FARG64
HGLN38

site_idBC4
Number of Residues9
DetailsBINDING SITE FOR RESIDUE SO4 G 4019
ChainResidue
GGLY15
GSER16
GARG58
GHIS59
GSER91
GALA92
GTHR191
GMTA4021
GHOH4147

site_idBC5
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SO4 G 4020
ChainResidue
AARG180
GLEU96
GARG97
GMET98
GARG180
GHOH4238

site_idBC6
Number of Residues9
DetailsBINDING SITE FOR RESIDUE SO4 H 4022
ChainResidue
HGLY15
HSER16
HARG58
HHIS59
HSER91
HALA92
HTHR191
HMTA4024
HHOH4142

site_idBC7
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SO4 H 4023
ChainResidue
CARG97
CMET98
CARG180
HARG97
HHOH4166
HHOH4192

site_idBC8
Number of Residues9
DetailsBINDING SITE FOR RESIDUE SO4 I 4025
ChainResidue
IGLY15
ISER16
IARG58
IHIS59
ISER91
IALA92
ITHR191
IMTA4027
IHOH4163

site_idBC9
Number of Residues8
DetailsBINDING SITE FOR RESIDUE SO4 I 4026
ChainResidue
BLEU96
BARG97
BMET98
BARG180
BHOH4060
BHOH4119
IHOH4198
IHOH4257

site_idCC1
Number of Residues9
DetailsBINDING SITE FOR RESIDUE SO4 J 4028
ChainResidue
JGLY15
JSER16
JARG58
JHIS59
JSER91
JALA92
JTHR191
JMTA4030
JHOH4054

site_idCC2
Number of Residues8
DetailsBINDING SITE FOR RESIDUE SO4 J 4029
ChainResidue
DARG97
DHOH4166
DHOH4200
JLEU96
JARG97
JMET98
JARG180
JHOH4245

site_idCC3
Number of Residues9
DetailsBINDING SITE FOR RESIDUE SO4 K 4031
ChainResidue
KGLY15
KSER16
KARG58
KHIS59
KSER91
KALA92
KTHR191
KMTA4033
KHOH4052

site_idCC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 K 4032
ChainResidue
FLEU96
FARG97
FMET98
FHOH4244
KARG180

site_idCC5
Number of Residues9
DetailsBINDING SITE FOR RESIDUE SO4 L 4034
ChainResidue
LGLY15
LSER16
LARG58
LHIS59
LSER91
LALA92
LTHR191
LMTA4036
LHOH4166

site_idCC6
Number of Residues10
DetailsBINDING SITE FOR RESIDUE SO4 L 4035
ChainResidue
EHOH4070
EHOH4248
LLEU96
LARG97
LMET98
LARG180
LHOH4093
LHOH4156
LHOH4276
LHOH4314

site_idCC7
Number of Residues16
DetailsBINDING SITE FOR RESIDUE MTA A 4003
ChainResidue
ASER16
AHIS59
APRO67
AALA92
AVAL93
AGLY94
APHE170
AILE188
AGLY189
AMET190
AASP214
AASP216
ASO44000
AHOH4007
BHIS130
BHOH4021

site_idCC8
Number of Residues16
DetailsBINDING SITE FOR RESIDUE MTA B 4006
ChainResidue
BSER16
BHIS59
BPRO67
BALA92
BVAL93
BGLY94
BPHE170
BILE188
BGLY189
BMET190
BASP214
BASP216
BSO44004
BHOH4012
CHIS130
CHOH4016

site_idCC9
Number of Residues16
DetailsBINDING SITE FOR RESIDUE MTA C 4009
ChainResidue
AHIS130
AHOH4014
CSER16
CHIS59
CPRO67
CALA92
CVAL93
CGLY94
CPHE170
CILE188
CGLY189
CMET190
CASP214
CASP216
CSO44007
CHOH4017

site_idDC1
Number of Residues16
DetailsBINDING SITE FOR RESIDUE MTA D 4012
ChainResidue
DSER16
DHIS59
DPRO67
DALA92
DVAL93
DGLY94
DPHE170
DILE188
DGLY189
DMET190
DASP214
DASP216
DSO44010
DHOH4019
DHOH4021
EHIS130

site_idDC2
Number of Residues16
DetailsBINDING SITE FOR RESIDUE MTA E 4015
ChainResidue
ESER16
EHIS59
EPRO67
EALA92
EVAL93
EGLY94
EPHE170
EILE188
EGLY189
EMET190
EASP214
EASP216
ESO44013
EHOH4019
FHIS130
FHOH4022

site_idDC3
Number of Residues16
DetailsBINDING SITE FOR RESIDUE MTA F 4018
ChainResidue
DHIS130
DHOH4023
FSER16
FHIS59
FPRO67
FALA92
FVAL93
FGLY94
FPHE170
FILE188
FGLY189
FMET190
FASP214
FASP216
FSO44016
FHOH4028

site_idDC4
Number of Residues16
DetailsBINDING SITE FOR RESIDUE MTA G 4021
ChainResidue
GSER16
GHIS59
GPRO67
GALA92
GVAL93
GGLY94
GPHE170
GILE188
GGLY189
GMET190
GASP214
GASP216
GSO44019
GHOH4026
HHIS130
HHOH4037

site_idDC5
Number of Residues16
DetailsBINDING SITE FOR RESIDUE MTA H 4024
ChainResidue
HSER16
HHIS59
HPRO67
HALA92
HVAL93
HGLY94
HPHE170
HILE188
HGLY189
HMET190
HASP214
HASP216
HSO44022
HHOH4034
IHIS130
IHOH4035

site_idDC6
Number of Residues17
DetailsBINDING SITE FOR RESIDUE MTA I 4027
ChainResidue
GHIS130
ISER16
IHIS59
IPRO67
IALA92
IVAL93
IGLY94
IPHE170
IILE188
IGLY189
IMET190
IASP214
IASP216
IVAL228
ISO44025
IHOH4032
IHOH4037

site_idDC7
Number of Residues16
DetailsBINDING SITE FOR RESIDUE MTA J 4030
ChainResidue
JSER16
JHIS59
JPRO67
JALA92
JVAL93
JGLY94
JPHE170
JILE188
JGLY189
JMET190
JASP214
JASP216
JSO44028
JHOH4036
KHIS130
KHOH4043

site_idDC8
Number of Residues16
DetailsBINDING SITE FOR RESIDUE MTA K 4033
ChainResidue
KSER16
KHIS59
KPRO67
KALA92
KVAL93
KGLY94
KPHE170
KILE188
KGLY189
KMET190
KASP214
KASP216
KSO44031
KHOH4039
KHOH4040
LHIS130

site_idDC9
Number of Residues16
DetailsBINDING SITE FOR RESIDUE MTA L 4036
ChainResidue
JHIS130
JHOH4037
LSER16
LHIS59
LPRO67
LALA92
LVAL93
LGLY94
LPHE170
LILE188
LGLY189
LMET190
LASP214
LASP216
LSO44034
LHOH4040

Functional Information from PROSITE/UniProt
site_idPS01240
Number of Residues41
DetailsPNP_MTAP_2 Purine and other phosphorylases family 2 signature. LprhGrgHrIpphkInyrAn.IwAlkelGvrw.VIsvSAvGSL
ChainResidueDetails
ALEU56-LEU96

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues72
DetailsBINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_01963
ChainResidueDetails
ASER16
BMET190
BTHR191
BASP214
CSER16
CARG58
CSER91
CMET190
CTHR191
CASP214
DSER16
AARG58
DARG58
DSER91
DMET190
DTHR191
DASP214
ESER16
EARG58
ESER91
EMET190
ETHR191
ASER91
EASP214
FSER16
FARG58
FSER91
FMET190
FTHR191
FASP214
GSER16
GARG58
GSER91
AMET190
GMET190
GTHR191
GASP214
HSER16
HARG58
HSER91
HMET190
HTHR191
HASP214
ISER16
ATHR191
IARG58
ISER91
IMET190
ITHR191
IASP214
JSER16
JARG58
JSER91
JMET190
JTHR191
AASP214
JASP214
KSER16
KARG58
KSER91
KMET190
KTHR191
KASP214
LSER16
LARG58
LSER91
BSER16
LMET190
LTHR191
LASP214
BARG58
BSER91

site_idSWS_FT_FI2
Number of Residues24
DetailsSITE: Important for substrate specificity => ECO:0000255|HAMAP-Rule:MF_01963
ChainResidueDetails
ASER171
EALA225
FSER171
FALA225
GSER171
GALA225
HSER171
HALA225
ISER171
IALA225
JSER171
AALA225
JALA225
KSER171
KALA225
LSER171
LALA225
BSER171
BALA225
CSER171
CALA225
DSER171
DALA225
ESER171

Catalytic Information from CSA
site_idCSA1
Number of Residues2
DetailsAnnotated By Reference To The Literature 1cg6
ChainResidueDetails
AASP216
AASP214

site_idCSA10
Number of Residues2
DetailsAnnotated By Reference To The Literature 1cg6
ChainResidueDetails
JASP216
JASP214

site_idCSA11
Number of Residues2
DetailsAnnotated By Reference To The Literature 1cg6
ChainResidueDetails
KASP216
KASP214

site_idCSA12
Number of Residues2
DetailsAnnotated By Reference To The Literature 1cg6
ChainResidueDetails
LASP216
LASP214

site_idCSA2
Number of Residues2
DetailsAnnotated By Reference To The Literature 1cg6
ChainResidueDetails
BASP216
BASP214

site_idCSA3
Number of Residues2
DetailsAnnotated By Reference To The Literature 1cg6
ChainResidueDetails
CASP216
CASP214

site_idCSA4
Number of Residues2
DetailsAnnotated By Reference To The Literature 1cg6
ChainResidueDetails
DASP216
DASP214

site_idCSA5
Number of Residues2
DetailsAnnotated By Reference To The Literature 1cg6
ChainResidueDetails
EASP216
EASP214

site_idCSA6
Number of Residues2
DetailsAnnotated By Reference To The Literature 1cg6
ChainResidueDetails
FASP216
FASP214

site_idCSA7
Number of Residues2
DetailsAnnotated By Reference To The Literature 1cg6
ChainResidueDetails
GASP216
GASP214

site_idCSA8
Number of Residues2
DetailsAnnotated By Reference To The Literature 1cg6
ChainResidueDetails
HASP216
HASP214

site_idCSA9
Number of Residues2
DetailsAnnotated By Reference To The Literature 1cg6
ChainResidueDetails
IASP216
IASP214

225946

PDB entries from 2024-10-09

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