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1ZY1

X-ray structure of peptide deformylase from Arabidopsis thaliana (AtPDF1A) in complex with Met-Ala-Ser

Functional Information from GO Data
ChainGOidnamespacecontents
A0042586molecular_functionpeptide deformylase activity
B0042586molecular_functionpeptide deformylase activity
Functional Information from PDB Data
site_idAC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE ZN A 198
ChainResidue
AGLN54
ACYS111
AHIS153
AHIS157
AHOH199
DHOH4

site_idAC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE ZN B 198
ChainResidue
BHIS157
BHOH199
BGLN54
BCYS111
BHIS153

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues46
DetailsRegion: {"description":"Dimerization"}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues2
DetailsActive site: {}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues12
DetailsBinding site: {}
ChainResidueDetails

site_idSWS_FT_FI4
Number of Residues2
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"16192279","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

Catalytic Information from CSA
site_idCSA1
Number of Residues4
DetailsAnnotated By Reference To The Literature 1bs4
ChainResidueDetails
AGLN54
AGLY49
ALEU112
AGLU154

site_idCSA2
Number of Residues4
DetailsAnnotated By Reference To The Literature 1bs4
ChainResidueDetails
BGLN54
BGLY49
BLEU112
BGLU154

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PDB entries from 2025-10-29

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