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1ZM7

Crystal structure of D. melanogaster deoxyribonucleoside kinase mutant N64D in complex with dTTP

Functional Information from GO Data
ChainGOidnamespacecontents
A0000166molecular_functionnucleotide binding
A0004136molecular_functiondeoxyadenosine kinase activity
A0004137molecular_functiondeoxycytidine kinase activity
A0004138molecular_functiondeoxyguanosine kinase activity
A0004797molecular_functionthymidine kinase activity
A0004849molecular_functionuridine kinase activity
A0005524molecular_functionATP binding
A0005737cellular_componentcytoplasm
A0005739cellular_componentmitochondrion
A0006139biological_processnucleobase-containing compound metabolic process
A0006170biological_processdAMP biosynthetic process
A0006222biological_processUMP biosynthetic process
A0009157biological_processdeoxyribonucleoside monophosphate biosynthetic process
A0009224biological_processCMP biosynthetic process
A0016301molecular_functionkinase activity
A0016310biological_processphosphorylation
A0016740molecular_functiontransferase activity
A0019136molecular_functiondeoxynucleoside kinase activity
A0043174biological_processnucleoside salvage
A0043771molecular_functioncytidine kinase activity
A0071897biological_processDNA biosynthetic process
A1901293biological_processnucleoside phosphate biosynthetic process
B0000166molecular_functionnucleotide binding
B0004136molecular_functiondeoxyadenosine kinase activity
B0004137molecular_functiondeoxycytidine kinase activity
B0004138molecular_functiondeoxyguanosine kinase activity
B0004797molecular_functionthymidine kinase activity
B0004849molecular_functionuridine kinase activity
B0005524molecular_functionATP binding
B0005737cellular_componentcytoplasm
B0005739cellular_componentmitochondrion
B0006139biological_processnucleobase-containing compound metabolic process
B0006170biological_processdAMP biosynthetic process
B0006222biological_processUMP biosynthetic process
B0009157biological_processdeoxyribonucleoside monophosphate biosynthetic process
B0009224biological_processCMP biosynthetic process
B0016301molecular_functionkinase activity
B0016310biological_processphosphorylation
B0016740molecular_functiontransferase activity
B0019136molecular_functiondeoxynucleoside kinase activity
B0043174biological_processnucleoside salvage
B0043771molecular_functioncytidine kinase activity
B0071897biological_processDNA biosynthetic process
B1901293biological_processnucleoside phosphate biosynthetic process
C0000166molecular_functionnucleotide binding
C0004136molecular_functiondeoxyadenosine kinase activity
C0004137molecular_functiondeoxycytidine kinase activity
C0004138molecular_functiondeoxyguanosine kinase activity
C0004797molecular_functionthymidine kinase activity
C0004849molecular_functionuridine kinase activity
C0005524molecular_functionATP binding
C0005737cellular_componentcytoplasm
C0005739cellular_componentmitochondrion
C0006139biological_processnucleobase-containing compound metabolic process
C0006170biological_processdAMP biosynthetic process
C0006222biological_processUMP biosynthetic process
C0009157biological_processdeoxyribonucleoside monophosphate biosynthetic process
C0009224biological_processCMP biosynthetic process
C0016301molecular_functionkinase activity
C0016310biological_processphosphorylation
C0016740molecular_functiontransferase activity
C0019136molecular_functiondeoxynucleoside kinase activity
C0043174biological_processnucleoside salvage
C0043771molecular_functioncytidine kinase activity
C0071897biological_processDNA biosynthetic process
C1901293biological_processnucleoside phosphate biosynthetic process
D0000166molecular_functionnucleotide binding
D0004136molecular_functiondeoxyadenosine kinase activity
D0004137molecular_functiondeoxycytidine kinase activity
D0004138molecular_functiondeoxyguanosine kinase activity
D0004797molecular_functionthymidine kinase activity
D0004849molecular_functionuridine kinase activity
D0005524molecular_functionATP binding
D0005737cellular_componentcytoplasm
D0005739cellular_componentmitochondrion
D0006139biological_processnucleobase-containing compound metabolic process
D0006170biological_processdAMP biosynthetic process
D0006222biological_processUMP biosynthetic process
D0009157biological_processdeoxyribonucleoside monophosphate biosynthetic process
D0009224biological_processCMP biosynthetic process
D0016301molecular_functionkinase activity
D0016310biological_processphosphorylation
D0016740molecular_functiontransferase activity
D0019136molecular_functiondeoxynucleoside kinase activity
D0043174biological_processnucleoside salvage
D0043771molecular_functioncytidine kinase activity
D0071897biological_processDNA biosynthetic process
D1901293biological_processnucleoside phosphate biosynthetic process
Functional Information from PDB Data
site_idAC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG D 400
ChainResidue
DTHR34
DGLU52
DGLU104
DARG169
DTTP303
DHOH446

site_idAC2
Number of Residues26
DetailsBINDING SITE FOR RESIDUE TTP A 300
ChainResidue
AGLY32
ALYS33
ATHR34
AGLU52
ATRP57
ALEU66
AMET69
ATYR70
APHE80
AGLN81
AVAL84
AGLU104
AARG105
AALA110
APHE114
AMET118
AARG167
AARG169
AGLU172
AHOH304
AHOH324
AHOH326
AHOH335
AILE29
AGLY30
ASER31

site_idAC3
Number of Residues25
DetailsBINDING SITE FOR RESIDUE TTP B 301
ChainResidue
BASN28
BILE29
BGLY30
BSER31
BGLY32
BLYS33
BTHR34
BGLU52
BTRP57
BMET69
BTYR70
BPHE80
BGLN81
BVAL84
BGLU104
BARG105
BALA110
BPHE114
BARG167
BARG169
BGLU172
BHOH303
BHOH320
BHOH334
BHOH340

site_idAC4
Number of Residues24
DetailsBINDING SITE FOR RESIDUE TTP C 302
ChainResidue
CILE29
CGLY30
CSER31
CGLY32
CLYS33
CTHR34
CGLU52
CTRP57
CMET69
CTYR70
CPHE80
CGLN81
CVAL84
CGLU104
CARG105
CALA110
CPHE114
CMET118
CARG167
CARG169
CGLU172
CHOH304
CHOH337
CHOH342

site_idAC5
Number of Residues27
DetailsBINDING SITE FOR RESIDUE TTP D 303
ChainResidue
DMET118
DARG167
DARG169
DGLU172
DMG400
DHOH430
DHOH433
DHOH434
DHOH436
DILE29
DGLY30
DSER31
DGLY32
DLYS33
DTHR34
DGLU52
DTRP57
DLEU66
DMET69
DTYR70
DPHE80
DGLN81
DVAL84
DGLU104
DARG105
DALA110
DPHE114

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsACT_SITE: Proton acceptor => ECO:0000255
ChainResidueDetails
AGLU104
BGLU104
CGLU104
DGLU104

site_idSWS_FT_FI2
Number of Residues4
DetailsBINDING: BINDING => ECO:0000250
ChainResidueDetails
AGLY27
BGLY27
CGLY27
DGLY27

site_idSWS_FT_FI3
Number of Residues20
DetailsBINDING:
ChainResidueDetails
AGLU52
ATYR70
AGLN81
AARG105
AGLU172
BGLU52
BTYR70
BGLN81
BARG105
BGLU172
CGLU52
CTYR70
CGLN81
CARG105
CGLU172
DGLU52
DTYR70
DGLN81
DARG105
DGLU172

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PDB entries from 2024-04-17

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