1ZBB
Structure of the 4_601_167 Tetranucleosome
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0000786 | cellular_component | nucleosome |
| A | 0003677 | molecular_function | DNA binding |
| A | 0005515 | molecular_function | protein binding |
| A | 0005634 | cellular_component | nucleus |
| A | 0005654 | cellular_component | nucleoplasm |
| A | 0005694 | cellular_component | chromosome |
| A | 0030527 | molecular_function | structural constituent of chromatin |
| A | 0046982 | molecular_function | protein heterodimerization activity |
| B | 0000786 | cellular_component | nucleosome |
| B | 0003677 | molecular_function | DNA binding |
| B | 0005515 | molecular_function | protein binding |
| B | 0005634 | cellular_component | nucleus |
| B | 0005694 | cellular_component | chromosome |
| B | 0006334 | biological_process | nucleosome assembly |
| B | 0030527 | molecular_function | structural constituent of chromatin |
| B | 0046982 | molecular_function | protein heterodimerization activity |
| C | 0000786 | cellular_component | nucleosome |
| C | 0003677 | molecular_function | DNA binding |
| C | 0005634 | cellular_component | nucleus |
| C | 0005694 | cellular_component | chromosome |
| C | 0030527 | molecular_function | structural constituent of chromatin |
| C | 0031507 | biological_process | heterochromatin formation |
| C | 0046982 | molecular_function | protein heterodimerization activity |
| D | 0000786 | cellular_component | nucleosome |
| D | 0003677 | molecular_function | DNA binding |
| D | 0005515 | molecular_function | protein binding |
| D | 0005634 | cellular_component | nucleus |
| D | 0005694 | cellular_component | chromosome |
| D | 0030527 | molecular_function | structural constituent of chromatin |
| D | 0046982 | molecular_function | protein heterodimerization activity |
| E | 0000786 | cellular_component | nucleosome |
| E | 0003677 | molecular_function | DNA binding |
| E | 0005515 | molecular_function | protein binding |
| E | 0005634 | cellular_component | nucleus |
| E | 0005654 | cellular_component | nucleoplasm |
| E | 0005694 | cellular_component | chromosome |
| E | 0030527 | molecular_function | structural constituent of chromatin |
| E | 0046982 | molecular_function | protein heterodimerization activity |
| F | 0000786 | cellular_component | nucleosome |
| F | 0003677 | molecular_function | DNA binding |
| F | 0005515 | molecular_function | protein binding |
| F | 0005634 | cellular_component | nucleus |
| F | 0005694 | cellular_component | chromosome |
| F | 0006334 | biological_process | nucleosome assembly |
| F | 0030527 | molecular_function | structural constituent of chromatin |
| F | 0046982 | molecular_function | protein heterodimerization activity |
| G | 0000786 | cellular_component | nucleosome |
| G | 0003677 | molecular_function | DNA binding |
| G | 0005634 | cellular_component | nucleus |
| G | 0005694 | cellular_component | chromosome |
| G | 0030527 | molecular_function | structural constituent of chromatin |
| G | 0031507 | biological_process | heterochromatin formation |
| G | 0046982 | molecular_function | protein heterodimerization activity |
| H | 0000786 | cellular_component | nucleosome |
| H | 0003677 | molecular_function | DNA binding |
| H | 0005515 | molecular_function | protein binding |
| H | 0005634 | cellular_component | nucleus |
| H | 0005694 | cellular_component | chromosome |
| H | 0030527 | molecular_function | structural constituent of chromatin |
| H | 0046982 | molecular_function | protein heterodimerization activity |
| a | 0000786 | cellular_component | nucleosome |
| a | 0003677 | molecular_function | DNA binding |
| a | 0005515 | molecular_function | protein binding |
| a | 0005634 | cellular_component | nucleus |
| a | 0005654 | cellular_component | nucleoplasm |
| a | 0005694 | cellular_component | chromosome |
| a | 0030527 | molecular_function | structural constituent of chromatin |
| a | 0046982 | molecular_function | protein heterodimerization activity |
| b | 0000786 | cellular_component | nucleosome |
| b | 0003677 | molecular_function | DNA binding |
| b | 0005515 | molecular_function | protein binding |
| b | 0005634 | cellular_component | nucleus |
| b | 0005694 | cellular_component | chromosome |
| b | 0006334 | biological_process | nucleosome assembly |
| b | 0030527 | molecular_function | structural constituent of chromatin |
| b | 0046982 | molecular_function | protein heterodimerization activity |
| c | 0000786 | cellular_component | nucleosome |
| c | 0003677 | molecular_function | DNA binding |
| c | 0005634 | cellular_component | nucleus |
| c | 0005694 | cellular_component | chromosome |
| c | 0030527 | molecular_function | structural constituent of chromatin |
| c | 0031507 | biological_process | heterochromatin formation |
| c | 0046982 | molecular_function | protein heterodimerization activity |
| d | 0000786 | cellular_component | nucleosome |
| d | 0003677 | molecular_function | DNA binding |
| d | 0005515 | molecular_function | protein binding |
| d | 0005634 | cellular_component | nucleus |
| d | 0005694 | cellular_component | chromosome |
| d | 0030527 | molecular_function | structural constituent of chromatin |
| d | 0046982 | molecular_function | protein heterodimerization activity |
| e | 0000786 | cellular_component | nucleosome |
| e | 0003677 | molecular_function | DNA binding |
| e | 0005515 | molecular_function | protein binding |
| e | 0005634 | cellular_component | nucleus |
| e | 0005654 | cellular_component | nucleoplasm |
| e | 0005694 | cellular_component | chromosome |
| e | 0030527 | molecular_function | structural constituent of chromatin |
| e | 0046982 | molecular_function | protein heterodimerization activity |
| f | 0000786 | cellular_component | nucleosome |
| f | 0003677 | molecular_function | DNA binding |
| f | 0005515 | molecular_function | protein binding |
| f | 0005634 | cellular_component | nucleus |
| f | 0005694 | cellular_component | chromosome |
| f | 0006334 | biological_process | nucleosome assembly |
| f | 0030527 | molecular_function | structural constituent of chromatin |
| f | 0046982 | molecular_function | protein heterodimerization activity |
| g | 0000786 | cellular_component | nucleosome |
| g | 0003677 | molecular_function | DNA binding |
| g | 0005634 | cellular_component | nucleus |
| g | 0005694 | cellular_component | chromosome |
| g | 0030527 | molecular_function | structural constituent of chromatin |
| g | 0031507 | biological_process | heterochromatin formation |
| g | 0046982 | molecular_function | protein heterodimerization activity |
| h | 0000786 | cellular_component | nucleosome |
| h | 0003677 | molecular_function | DNA binding |
| h | 0005515 | molecular_function | protein binding |
| h | 0005634 | cellular_component | nucleus |
| h | 0005694 | cellular_component | chromosome |
| h | 0030527 | molecular_function | structural constituent of chromatin |
| h | 0046982 | molecular_function | protein heterodimerization activity |
Functional Information from PROSITE/UniProt
| site_id | PS00046 |
| Number of Residues | 7 |
| Details | HISTONE_H2A Histone H2A signature. AGLqFPV |
| Chain | Residue | Details |
| C | ALA21-VAL27 |
| site_id | PS00047 |
| Number of Residues | 5 |
| Details | HISTONE_H4 Histone H4 signature. GAKRH |
| Chain | Residue | Details |
| B | GLY14-HIS18 |
| site_id | PS00322 |
| Number of Residues | 7 |
| Details | HISTONE_H3_1 Histone H3 signature 1. KAPRKQL |
| Chain | Residue | Details |
| A | LYS14-LEU20 |
| site_id | PS00357 |
| Number of Residues | 23 |
| Details | HISTONE_H2B Histone H2B signature. REIQTavRlLLpGELaKHAVSEG |
| Chain | Residue | Details |
| D | ARG89-GLY111 |
| site_id | PS00959 |
| Number of Residues | 9 |
| Details | HISTONE_H3_2 Histone H3 signature 2. PFqRLVREI |
| Chain | Residue | Details |
| A | PRO66-ILE74 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 16 |
| Details | MOD_RES: N6-acetyllysine => ECO:0000250|UniProtKB:P0C1H4 |
| Chain | Residue | Details |
| D | SER3 | |
| d | GLY10 | |
| d | LYS13 | |
| d | THR18 | |
| h | SER3 | |
| h | GLY10 | |
| h | LYS13 | |
| h | THR18 | |
| D | GLY10 | |
| D | LYS13 | |
| D | THR18 | |
| H | SER3 | |
| H | GLY10 | |
| H | LYS13 | |
| H | THR18 | |
| d | SER3 |
| site_id | SWS_FT_FI2 |
| Number of Residues | 4 |
| Details | MOD_RES: Phosphoserine => ECO:0000269|PubMed:12757711 |
| Chain | Residue | Details |
| D | LYS12 | |
| H | LYS12 | |
| d | LYS12 | |
| h | LYS12 |
| site_id | SWS_FT_FI3 |
| Number of Residues | 4 |
| Details | CARBOHYD: O-linked (GlcNAc) serine => ECO:0000250|UniProtKB:P62807 |
| Chain | Residue | Details |
| D | GLU110 | |
| H | GLU110 | |
| d | GLU110 | |
| h | GLU110 | |
| c | THR10 | |
| c | LEU96 | |
| g | THR10 | |
| g | LEU96 |
| site_id | SWS_FT_FI4 |
| Number of Residues | 8 |
| Details | CROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000250|UniProtKB:P0C1H4 |
| Chain | Residue | Details |
| D | TYR118 | |
| G | GLY37 | |
| H | TYR118 | |
| g | GLY37 | |
| d | TYR118 | |
| h | TYR118 |
| site_id | SWS_FT_FI5 |
| Number of Residues | 8 |
| Details | MOD_RES: N6-(2-hydroxyisobutyryl)lysine => ECO:0000250|UniProtKB:P0C0S8 |
| Chain | Residue | Details |
| C | LYS75 | |
| b | ARG17 | |
| b | ARG45 | |
| b | THR80 | |
| f | GLY9 | |
| f | ARG17 | |
| f | ARG45 | |
| f | THR80 | |
| C | THR76 | |
| G | LYS75 | |
| G | THR76 | |
| c | LYS75 | |
| c | THR76 | |
| g | LYS75 | |
| g | THR76 | |
| b | GLY9 |
| site_id | SWS_FT_FI6 |
| Number of Residues | 4 |
| Details | MOD_RES: N5-methylglutamine => ECO:0000250 |
| Chain | Residue | Details |
| C | GLY105 | |
| G | GLY105 | |
| c | GLY105 | |
| g | GLY105 | |
| b | GLY13 | |
| b | VAL21 | |
| f | GLY13 | |
| f | VAL21 |
| site_id | SWS_FT_FI7 |
| Number of Residues | 4 |
| Details | MOD_RES: N6-glutaryllysine; alternate => ECO:0000250|UniProtKB:P0C0S8 |
| Chain | Residue | Details |
| C | LYS119 | |
| G | LYS119 | |
| c | LYS119 | |
| g | LYS119 | |
| b | PRO32 | |
| b | ARG92 | |
| f | PRO32 | |
| f | ARG92 |
| site_id | SWS_FT_FI8 |
| Number of Residues | 16 |
| Details | CROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000250 |
| Chain | Residue | Details |
| C | ALA14 | |
| c | THR16 | |
| c | THR120 | |
| g | ALA14 | |
| g | THR16 | |
| g | THR120 | |
| F | GLY48 | |
| C | THR16 | |
| C | THR120 | |
| G | ALA14 | |
| G | THR16 | |
| G | THR120 | |
| c | ALA14 |
| site_id | SWS_FT_FI9 |
| Number of Residues | 8 |
| Details | MOD_RES: Phosphotyrosine => ECO:0000250|UniProtKB:P62805 |
| Chain | Residue | Details |
| B | GLU52 | |
| B | ALA89 | |
| F | GLU52 | |
| F | ALA89 | |
| b | GLU52 | |
| b | ALA89 | |
| f | GLU52 | |
| f | ALA89 |
| site_id | SWS_FT_FI10 |
| Number of Residues | 4 |
| Details | MOD_RES: N6-glutaryllysine; alternate => ECO:0000250|UniProtKB:P62805 |
| Chain | Residue | Details |
| B | VAL60 | |
| E | LEU65 | |
| a | GLN19 | |
| a | ALA24 | |
| a | SER28 | |
| a | LYS37 | |
| a | LEU65 | |
| e | GLN19 | |
| e | ALA24 | |
| e | SER28 | |
| e | LYS37 | |
| F | VAL60 | |
| e | LEU65 | |
| b | VAL60 | |
| f | VAL60 | |
| A | LEU65 | |
| E | GLN19 | |
| E | ALA24 | |
| E | SER28 | |
| E | LYS37 |
| site_id | SWS_FT_FI11 |
| Number of Residues | 4 |
| Details | MOD_RES: N6-succinyllysine => ECO:0000250|UniProtKB:P62805 |
| Chain | Residue | Details |
| B | ARG78 | |
| F | ARG78 | |
| b | ARG78 | |
| f | ARG78 |
| site_id | SWS_FT_FI12 |
| Number of Residues | 4 |
| Details | CROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in UFM1); alternate => ECO:0000250|UniProtKB:P62805 |
| Chain | Residue | Details |
| B | PRO32 | |
| F | PRO32 | |
| b | PRO32 | |
| f | PRO32 |
| site_id | SWS_FT_FI13 |
| Number of Residues | 8 |
| Details | CROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin); alternate => ECO:0000250|UniProtKB:P62805 |
| Chain | Residue | Details |
| A | PRO38 | |
| B | ARG92 | |
| a | PRO38 | |
| F | ARG92 | |
| b | ARG92 | |
| f | ARG92 |
| site_id | SWS_FT_FI14 |
| Number of Residues | 4 |
| Details | MOD_RES: Phosphotyrosine => ECO:0000250|UniProtKB:Q71DI3 |
| Chain | Residue | Details |
| A | ARG42 | |
| E | ARG42 | |
| a | ARG42 | |
| e | ARG42 |
| site_id | SWS_FT_FI15 |
| Number of Residues | 8 |
| Details | MOD_RES: N6-succinyllysine; alternate => ECO:0000250|UniProtKB:P84228 |
| Chain | Residue | Details |
| A | SER57 | |
| A | THR80 | |
| E | SER57 | |
| E | THR80 | |
| a | SER57 | |
| a | THR80 | |
| e | SER57 | |
| e | THR80 |
| site_id | SWS_FT_FI16 |
| Number of Residues | 4 |
| Details | MOD_RES: Phosphoserine => ECO:0000250|UniProtKB:Q71DI3 |
| Chain | Residue | Details |
| A | THR58 | |
| E | THR58 | |
| a | THR58 | |
| e | THR58 |
| site_id | SWS_FT_FI17 |
| Number of Residues | 8 |
| Details | MOD_RES: Phosphothreonine => ECO:0000250|UniProtKB:Q71DI3 |
| Chain | Residue | Details |
| A | ASP81 | |
| A | ASN108 | |
| E | ASP81 | |
| E | ASN108 | |
| a | ASP81 | |
| a | ASN108 | |
| e | ASP81 | |
| e | ASN108 |
| site_id | SWS_FT_FI18 |
| Number of Residues | 4 |
| Details | MOD_RES: Phosphoserine => ECO:0000250|UniProtKB:P84243 |
| Chain | Residue | Details |
| A | SER87 | |
| E | SER87 | |
| a | SER87 | |
| e | SER87 |
| site_id | SWS_FT_FI19 |
| Number of Residues | 4 |
| Details | MOD_RES: N6-glutaryllysine; alternate => ECO:0000250|UniProtKB:Q71DI3 |
| Chain | Residue | Details |
| A | ARG116 | |
| E | ARG116 | |
| a | ARG116 | |
| e | ARG116 |
| site_id | SWS_FT_FI20 |
| Number of Residues | 4 |
| Details | MOD_RES: N6-succinyllysine; alternate => ECO:0000250|UniProtKB:Q71DI3 |
| Chain | Residue | Details |
| A | ASP123 | |
| E | ASP123 | |
| a | ASP123 | |
| e | ASP123 |
| site_id | SWS_FT_FI21 |
| Number of Residues | 4 |
| Details | LIPID: S-palmitoyl cysteine => ECO:0000250|UniProtKB:Q71DI3 |
| Chain | Residue | Details |
| A | ALA111 | |
| E | ALA111 | |
| a | ALA111 | |
| e | ALA111 |
