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1YV5

Human farnesyl diphosphate synthase complexed with Mg and risedronate

Functional Information from GO Data
ChainGOidnamespacecontents
A0004659molecular_functionprenyltransferase activity
A0008299biological_processisoprenoid biosynthetic process
A0016765molecular_functiontransferase activity, transferring alkyl or aryl (other than methyl) groups
Functional Information from PDB Data
site_idAC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG A 907
ChainResidue
AASP117
AASP121
ARIS901
AMG909
AHOH1009
AHOH1017

site_idAC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG A 908
ChainResidue
AHOH1046
AHOH1080
AASP257
ARIS901
AHOH1045

site_idAC3
Number of Residues7
DetailsBINDING SITE FOR RESIDUE MG A 909
ChainResidue
AASP117
AASP121
ARIS901
AMG907
AHOH1012
AHOH1034
AHOH1049

site_idAC4
Number of Residues9
DetailsBINDING SITE FOR RESIDUE PO4 A 1001
ChainResidue
AGLY70
ALYS71
AARG74
AGLN110
AARG127
APO41002
AHOH1018
AHOH1026
AHOH1050

site_idAC5
Number of Residues8
DetailsBINDING SITE FOR RESIDUE PO4 A 1002
ChainResidue
AARG74
AGLN110
AARG126
APHE253
ALYS271
ARIS901
APO41001
AHOH1050

site_idAC6
Number of Residues22
DetailsBINDING SITE FOR RESIDUE RIS A 901
ChainResidue
AASP117
AASP121
AARG126
AGLN185
ALYS214
ATHR215
AGLN254
AASP257
ALYS271
AMG907
AMG908
AMG909
APO41002
AHOH1009
AHOH1010
AHOH1017
AHOH1044
AHOH1045
AHOH1046
AHOH1049
AHOH1076
AHOH1080

Functional Information from PROSITE/UniProt
site_idPS00444
Number of Residues13
DetailsPOLYPRENYL_SYNTHASE_2 Polyprenyl synthases signature 2. MGefFQIqDDYlD
ChainResidueDetails
AMET249-ASP261

site_idPS00723
Number of Residues15
DetailsPOLYPRENYL_SYNTHASE_1 Polyprenyl synthases signature 1. LVaDDim..DssltRRG
ChainResidueDetails
ALEU114-GLY128

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues6
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"16684881","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"1ZW5","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues5
DetailsBinding site: {}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues1
DetailsBinding site: {"evidences":[{"evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI4
Number of Residues2
DetailsSite: {"description":"Important for determining product chain length","evidences":[{"evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI5
Number of Residues1
DetailsModified residue: {"description":"N6-acetyllysine; alternate","evidences":[{"source":"PubMed","id":"19608861","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI6
Number of Residues1
DetailsModified residue: {"description":"N6-acetyllysine","evidences":[{"source":"PubMed","id":"19608861","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

Catalytic Information from CSA
site_idCSA1
Number of Residues2
DetailsAnnotated By Reference To The Literature 1fps
ChainResidueDetails
AARG126
APHE253

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PDB entries from 2025-12-03

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