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1YT5

Crystal structure of NAD kinase from Thermotoga maritima

Functional Information from GO Data
ChainGOidnamespacecontents
A0000166molecular_functionnucleotide binding
A0003951molecular_functionNAD+ kinase activity
A0005524molecular_functionATP binding
A0005737cellular_componentcytoplasm
A0006741biological_processNADP+ biosynthetic process
A0016301molecular_functionkinase activity
A0016740molecular_functiontransferase activity
A0019674biological_processNAD+ metabolic process
A0046872molecular_functionmetal ion binding
A0051287molecular_functionNAD binding
B0000166molecular_functionnucleotide binding
B0003951molecular_functionNAD+ kinase activity
B0005524molecular_functionATP binding
B0005737cellular_componentcytoplasm
B0006741biological_processNADP+ biosynthetic process
B0016301molecular_functionkinase activity
B0016740molecular_functiontransferase activity
B0019674biological_processNAD+ metabolic process
B0046872molecular_functionmetal ion binding
B0051287molecular_functionNAD binding
C0000166molecular_functionnucleotide binding
C0003951molecular_functionNAD+ kinase activity
C0005524molecular_functionATP binding
C0005737cellular_componentcytoplasm
C0006741biological_processNADP+ biosynthetic process
C0016301molecular_functionkinase activity
C0016740molecular_functiontransferase activity
C0019674biological_processNAD+ metabolic process
C0046872molecular_functionmetal ion binding
C0051287molecular_functionNAD binding
D0000166molecular_functionnucleotide binding
D0003951molecular_functionNAD+ kinase activity
D0005524molecular_functionATP binding
D0005737cellular_componentcytoplasm
D0006741biological_processNADP+ biosynthetic process
D0016301molecular_functionkinase activity
D0016740molecular_functiontransferase activity
D0019674biological_processNAD+ metabolic process
D0046872molecular_functionmetal ion binding
D0051287molecular_functionNAD binding
Functional Information from PDB Data
site_idAC1
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 A 301
ChainResidue
AGLY113
AASN114
ASO4309

site_idAC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 B 302
ChainResidue
ASO4304
ASO4309
BGLY113
BASN114

site_idAC3
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 D 303
ChainResidue
DGLY113
DASN114

site_idAC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 A 304
ChainResidue
AHIS115
ALEU116
ASO4309
BSO4302

site_idAC5
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 C 305
ChainResidue
CGLY113
CASN114
DSO4308

site_idAC6
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 D 306
ChainResidue
DGLY50
DASP51
DLYS71
DLYS250

site_idAC7
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 C 307
ChainResidue
CGLY50
CASP51

site_idAC8
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SO4 D 308
ChainResidue
CASN114
CHIS115
CSO4305
DASN114
DHIS115
DSO4314

site_idAC9
Number of Residues7
DetailsBINDING SITE FOR RESIDUE SO4 A 309
ChainResidue
AASN114
AHIS115
ASO4301
ASO4304
BASN114
BHIS115
BSO4302

site_idBC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 B 310
ChainResidue
BGLY50
BASP51
BLYS71
BLYS250

site_idBC2
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 D 311
ChainResidue
DASP126
DLEU127

site_idBC3
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 D 312
ChainResidue
DARG207
DASP208
DLYS222

site_idBC4
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 A 313
ChainResidue
AARG248
AARG255
AARG256

site_idBC5
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 D 314
ChainResidue
DHIS115
DLEU116
DSO4308

site_idBC6
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 D 315
ChainResidue
DARG248
DASP249
DARG255
DARG256

site_idBC7
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 A 316
ChainResidue
AARG207
AASP208
ALYS222

site_idBC8
Number of Residues7
DetailsBINDING SITE FOR RESIDUE SO4 A 317
ChainResidue
AGLY50
AASP51
AGLY52
AARG74
ALEU75
AGLY76
ALYS250

site_idBC9
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 B 318
ChainResidue
BARG248
BARG255
BARG256

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsActive site: {"description":"Proton acceptor","evidences":[{"source":"HAMAP-Rule","id":"MF_00361","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues40
DetailsBinding site: {"evidences":[{"source":"HAMAP-Rule","id":"MF_00361","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

243531

PDB entries from 2025-10-22

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