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1YQU

Escherichia coli purine nucleoside phosphorylase II, the product of the xapA gene

Functional Information from GO Data
ChainGOidnamespacecontents
A0003824molecular_functioncatalytic activity
A0004731molecular_functionpurine-nucleoside phosphorylase activity
A0005737cellular_componentcytoplasm
A0006139biological_processnucleobase-containing compound metabolic process
A0006148biological_processinosine catabolic process
A0006149biological_processdeoxyinosine catabolic process
A0006152biological_processpurine nucleoside catabolic process
A0006161biological_processdeoxyguanosine catabolic process
A0009116biological_processnucleoside metabolic process
A0015949biological_processnucleobase-containing small molecule interconversion
A0016740molecular_functiontransferase activity
A0016757molecular_functionglycosyltransferase activity
A0016763molecular_functionpentosyltransferase activity
A0034214biological_processprotein hexamerization
A0034355biological_processNAD+ biosynthetic process via the salvage pathway
A0042802molecular_functionidentical protein binding
A0046115biological_processguanosine catabolic process
A0047724molecular_functioninosine nucleosidase activity
A0047975molecular_functionguanosine phosphorylase activity
A0055086biological_processnucleobase-containing small molecule metabolic process
A1903228biological_processxanthosine catabolic process
B0003824molecular_functioncatalytic activity
B0004731molecular_functionpurine-nucleoside phosphorylase activity
B0005737cellular_componentcytoplasm
B0006139biological_processnucleobase-containing compound metabolic process
B0006148biological_processinosine catabolic process
B0006149biological_processdeoxyinosine catabolic process
B0006152biological_processpurine nucleoside catabolic process
B0006161biological_processdeoxyguanosine catabolic process
B0009116biological_processnucleoside metabolic process
B0015949biological_processnucleobase-containing small molecule interconversion
B0016740molecular_functiontransferase activity
B0016757molecular_functionglycosyltransferase activity
B0016763molecular_functionpentosyltransferase activity
B0034214biological_processprotein hexamerization
B0034355biological_processNAD+ biosynthetic process via the salvage pathway
B0042802molecular_functionidentical protein binding
B0046115biological_processguanosine catabolic process
B0047724molecular_functioninosine nucleosidase activity
B0047975molecular_functionguanosine phosphorylase activity
B0055086biological_processnucleobase-containing small molecule metabolic process
B1903228biological_processxanthosine catabolic process
C0003824molecular_functioncatalytic activity
C0004731molecular_functionpurine-nucleoside phosphorylase activity
C0005737cellular_componentcytoplasm
C0006139biological_processnucleobase-containing compound metabolic process
C0006148biological_processinosine catabolic process
C0006149biological_processdeoxyinosine catabolic process
C0006152biological_processpurine nucleoside catabolic process
C0006161biological_processdeoxyguanosine catabolic process
C0009116biological_processnucleoside metabolic process
C0015949biological_processnucleobase-containing small molecule interconversion
C0016740molecular_functiontransferase activity
C0016757molecular_functionglycosyltransferase activity
C0016763molecular_functionpentosyltransferase activity
C0034214biological_processprotein hexamerization
C0034355biological_processNAD+ biosynthetic process via the salvage pathway
C0042802molecular_functionidentical protein binding
C0046115biological_processguanosine catabolic process
C0047724molecular_functioninosine nucleosidase activity
C0047975molecular_functionguanosine phosphorylase activity
C0055086biological_processnucleobase-containing small molecule metabolic process
C1903228biological_processxanthosine catabolic process
Functional Information from PDB Data
site_idAC1
Number of Residues7
DetailsBINDING SITE FOR RESIDUE PO4 A 500
ChainResidue
AGLY33
ASER34
AARG85
AHIS87
AASN116
AALA117
ASER216

site_idAC2
Number of Residues7
DetailsBINDING SITE FOR RESIDUE PO4 B 501
ChainResidue
BARG85
BHIS87
BASN116
BALA117
BSER216
BGLY33
BSER34

site_idAC3
Number of Residues7
DetailsBINDING SITE FOR RESIDUE PO4 C 502
ChainResidue
CGLY33
CSER34
CARG85
CHIS87
CASN116
CALA117
CSER216

site_idAC4
Number of Residues7
DetailsBINDING SITE FOR RESIDUE GUN A 400
ChainResidue
AALA117
AALA118
APHE196
AGLU197
AMET215
ATHR238
AASN239

site_idAC5
Number of Residues7
DetailsBINDING SITE FOR RESIDUE GUN B 401
ChainResidue
BALA117
BALA118
BPHE196
BGLU197
BMET215
BTHR238
BASN239

site_idAC6
Number of Residues7
DetailsBINDING SITE FOR RESIDUE GUN C 402
ChainResidue
CALA117
CALA118
CPHE196
CGLU197
CMET215
CTHR238
CASN239

Functional Information from PROSITE/UniProt
site_idPS01240
Number of Residues42
DetailsPNP_MTAP_2 Purine and other phosphorylases family 2 signature. VcmkGrgHfYegrgMtimTdaIrTfkllGcel.LFctNAaGSL
ChainResidueDetails
AVAL80-LEU121

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues12
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"15808857","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"1YQQ","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1YQU","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues6
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"15808857","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

Catalytic Information from CSA
site_idCSA1
Number of Residues3
DetailsAnnotated By Reference To The Literature 1cg6
ChainResidueDetails
AGLU90
AHIS87
AASN239

site_idCSA2
Number of Residues3
DetailsAnnotated By Reference To The Literature 1cg6
ChainResidueDetails
BGLU90
BHIS87
BASN239

site_idCSA3
Number of Residues3
DetailsAnnotated By Reference To The Literature 1cg6
ChainResidueDetails
CGLU90
CHIS87
CASN239

site_idCSA4
Number of Residues1
DetailsAnnotated By Reference To The Literature 1cg6
ChainResidueDetails
AASN239

site_idCSA5
Number of Residues1
DetailsAnnotated By Reference To The Literature 1cg6
ChainResidueDetails
BASN239

site_idCSA6
Number of Residues1
DetailsAnnotated By Reference To The Literature 1cg6
ChainResidueDetails
CASN239

246905

PDB entries from 2025-12-31

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