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1YP2

Crystal structure of potato tuber ADP-glucose pyrophosphorylase

Functional Information from GO Data
ChainGOidnamespacecontents
A0005978biological_processglycogen biosynthetic process
A0008878molecular_functionglucose-1-phosphate adenylyltransferase activity
A0009058biological_processbiosynthetic process
B0005978biological_processglycogen biosynthetic process
B0008878molecular_functionglucose-1-phosphate adenylyltransferase activity
B0009058biological_processbiosynthetic process
C0005978biological_processglycogen biosynthetic process
C0008878molecular_functionglucose-1-phosphate adenylyltransferase activity
C0009058biological_processbiosynthetic process
D0005978biological_processglycogen biosynthetic process
D0008878molecular_functionglucose-1-phosphate adenylyltransferase activity
D0009058biological_processbiosynthetic process
Functional Information from PDB Data
site_idAC1
Number of Residues7
DetailsBINDING SITE FOR RESIDUE SO4 A 2000
ChainResidue
AARG41
APRO47
AARG53
AASP370
ALYS404
ALYS441
AHOH3265

site_idAC2
Number of Residues9
DetailsBINDING SITE FOR RESIDUE SO4 B 2001
ChainResidue
BARG53
BSER80
BASP370
BLYS404
BLYS441
BHOH3277
BHOH3352
BARG41
BPRO47

site_idAC3
Number of Residues9
DetailsBINDING SITE FOR RESIDUE SO4 C 2002
ChainResidue
CARG41
CPRO47
CARG53
CSER80
CASP370
CLYS404
CLYS441
CHOH3309
CHOH3370

site_idAC4
Number of Residues8
DetailsBINDING SITE FOR RESIDUE SO4 D 2003
ChainResidue
DARG41
DPRO47
DARG53
DSER80
DASP370
DLYS404
DLYS441
DHOH3261

site_idAC5
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SO4 D 2004
ChainResidue
AARG83
DLYS69
DHIS134
DTHR135
DHOH3308
DHOH3461

site_idAC6
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 C 2005
ChainResidue
BARG83
CLYS69
CHIS134
CTHR135
CHOH3266

site_idAC7
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SO4 B 2006
ChainResidue
BLYS69
BHIS134
BTHR135
BHOH3297
BHOH3471
CARG83

site_idAC8
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SO4 A 2007
ChainResidue
ALYS69
AHIS134
ATHR135
AHOH3249
AHOH3380
DARG83

site_idAC9
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SO4 A 2008
ChainResidue
AARG53
AHIS84
AGLN314
AARG316
AHOH3301
AHOH3386

site_idBC1
Number of Residues8
DetailsBINDING SITE FOR RESIDUE SO4 B 2009
ChainResidue
BARG53
BHIS84
BGLN314
BARG316
BHOH3279
BHOH3290
BHOH3327
BHOH3451

site_idBC2
Number of Residues8
DetailsBINDING SITE FOR RESIDUE SO4 C 2010
ChainResidue
CARG53
CHIS84
CGLN314
CARG316
CHOH3252
CHOH3256
CHOH3295
CHOH3473

site_idBC3
Number of Residues7
DetailsBINDING SITE FOR RESIDUE SO4 D 2011
ChainResidue
DARG53
DHIS84
DGLN314
DARG316
DHOH3259
DHOH3265
DHOH3319

site_idBC4
Number of Residues10
DetailsBINDING SITE FOR RESIDUE PMB A 3226
ChainResidue
ALYS322
ALEU324
AVAL338
AILE339
ALYS340
ACYS354
AILE355
AHOH3462
BLYS297
BPRO298

site_idBC5
Number of Residues8
DetailsBINDING SITE FOR RESIDUE PMB B 3227
ChainResidue
BLYS340
BCYS354
BHOH3362
BHOH3403
ALYS297
APRO298
BLYS322
BVAL338

site_idBC6
Number of Residues12
DetailsBINDING SITE FOR RESIDUE PMB C 3228
ChainResidue
CLYS322
CVAL338
CILE339
CLYS340
CCYS354
CILE355
CARG378
CHOH3249
CHOH3310
CHOH3386
CHOH3428
DPRO298

site_idBC7
Number of Residues11
DetailsBINDING SITE FOR RESIDUE PMB D 3229
ChainResidue
CLYS297
CPRO298
DLYS322
DLEU324
DVAL338
DILE339
DLYS340
DCYS354
DARG378
DHOH3234
DHOH3423

Functional Information from PROSITE/UniProt
site_idPS00808
Number of Residues20
DetailsADP_GLC_PYROPHOSPH_1 ADP-glucose pyrophosphorylase signature 1. GGGaGTrLypLTkkrAkPAV
ChainResidueDetails
AGLY27-VAL46

site_idPS00809
Number of Residues9
DetailsADP_GLC_PYROPHOSPH_2 ADP-glucose pyrophosphorylase signature 2. WFqGTADAV
ChainResidueDetails
ATRP116-VAL124

site_idPS00810
Number of Residues11
DetailsADP_GLC_PYROPHOSPH_3 ADP-glucose pyrophosphorylase signature 3. ASMGIYVIskD
ChainResidueDetails
AALA228-ASP238

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsBINDING: BINDING => ECO:0000255
ChainResidueDetails
ALYS198
BLYS198
CLYS198
DLYS198

Catalytic Information from CSA
site_idCSA1
Number of Residues1
DetailsAnnotated By Reference To The Literature 1hv9
ChainResidueDetails
AARG33

site_idCSA2
Number of Residues1
DetailsAnnotated By Reference To The Literature 1hv9
ChainResidueDetails
BARG33

site_idCSA3
Number of Residues1
DetailsAnnotated By Reference To The Literature 1hv9
ChainResidueDetails
CARG33

site_idCSA4
Number of Residues1
DetailsAnnotated By Reference To The Literature 1hv9
ChainResidueDetails
DARG33

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PDB entries from 2024-06-26

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