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1YNW

Crystal Structure of Vitamin D Receptor and 9-cis Retinoic Acid Receptor DNA-Binding Domains Bound to a DR3 Response Element

Functional Information from GO Data
ChainGOidnamespacecontents
A0003700molecular_functionDNA-binding transcription factor activity
A0006355biological_processregulation of DNA-templated transcription
A0008270molecular_functionzinc ion binding
A0043565molecular_functionsequence-specific DNA binding
B0003700molecular_functionDNA-binding transcription factor activity
B0006355biological_processregulation of DNA-templated transcription
B0008270molecular_functionzinc ion binding
B0043565molecular_functionsequence-specific DNA binding
Functional Information from PDB Data
site_idAC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN A 150
ChainResidue
ACYS24
ACYS27
ACYS41
ACYS44

site_idAC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN A 151
ChainResidue
ACYS60
ACYS66
ACYS76
ACYS79

site_idAC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN B 350
ChainResidue
BCYS238
BCYS252
BCYS255
BCYS235

site_idAC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN B 351
ChainResidue
BCYS271
BCYS277
BCYS287
BCYS290

Functional Information from PROSITE/UniProt
site_idPS00031
Number of Residues27
DetailsNUCLEAR_REC_DBD_1 Nuclear hormones receptors DNA-binding region signature. CgvCg.Dratgf.HFnamtCegCkgFFrR
ChainResidueDetails
ACYS24-ARG50
BCYS235-ARG261

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues65
DetailsDNA_BIND: Nuclear receptor => ECO:0000255|PROSITE-ProRule:PRU00407
ChainResidueDetails
BCYS235-MET300

site_idSWS_FT_FI2
Number of Residues44
DetailsZN_FING: NR C4-type => ECO:0000255|PROSITE-ProRule:PRU00407
ChainResidueDetails
BCYS235-CYS255
BCYS271-CYS295

site_idSWS_FT_FI3
Number of Residues8
DetailsBINDING: BINDING => ECO:0000269|PubMed:10669605, ECO:0007744|PDB:1BY4
ChainResidueDetails
BCYS235
BCYS238
BCYS252
BCYS255
BCYS271
BCYS277
BCYS287
BCYS290

site_idSWS_FT_FI4
Number of Residues1
DetailsMOD_RES: N6-acetyllysine; by EP300 => ECO:0000269|PubMed:17761950
ChainResidueDetails
BLYS245

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PDB entries from 2024-07-24

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