Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

1YM4

Crystal structure of human beta secretase complexed with NVP-AMK640

Functional Information from GO Data
ChainGOidnamespacecontents
A0004190molecular_functionaspartic-type endopeptidase activity
A0006508biological_processproteolysis
A0016020cellular_componentmembrane
B0004190molecular_functionaspartic-type endopeptidase activity
B0006508biological_processproteolysis
B0016020cellular_componentmembrane
C0004190molecular_functionaspartic-type endopeptidase activity
C0006508biological_processproteolysis
C0016020cellular_componentmembrane
Functional Information from PDB Data
site_idAC1
Number of Residues23
DetailsBINDING SITE FOR CHAIN X OF NVP-AMK640 INHIBITOR
ChainResidue
AGLY11
AASP228
AGLY230
ATHR231
ATHR232
AARG235
AARG307
ALYS321
AHOH1028
AHOH1090
XHOH1012
AASP32
XHOH1091
XHOH1165
XHOH1172
XHOH1192
AGLY34
ATYR71
ATHR72
AGLN73
AILE110
AARG128
ATYR198

site_idAC2
Number of Residues22
DetailsBINDING SITE FOR CHAIN Y OF NVP-AMK640 INHIBITOR
ChainResidue
BGLY11
BGLN12
BGLY13
BASP32
BGLY34
BTYR71
BTHR72
BGLN73
BILE110
BTYR198
BASP228
BGLY230
BTHR231
BTHR232
BARG235
BARG307
BASP311
BALA313
BHOH2026
BHOH2062
YHOH2035
YHOH2139

site_idAC3
Number of Residues19
DetailsBINDING SITE FOR CHAIN Z OF NVP-AMK640 INHIBITOR
ChainResidue
CGLY11
CGLN12
CLEU30
CASP32
CPRO70
CTYR71
CTHR72
CGLN73
CILE110
CTYR198
CASP228
CGLY230
CTHR231
CTHR232
CARG235
CARG307
CHOH3003
ZHOH3076
ZHOH3094

Functional Information from PROSITE/UniProt
site_idPS00141
Number of Residues12
DetailsASP_PROTEASE Eukaryotic and viral aspartyl proteases active site. ILVDTGSSNFAV
ChainResidueDetails
AILE29-VAL40

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues6
DetailsACT_SITE: ACT_SITE => ECO:0000255|PROSITE-ProRule:PRU10094
ChainResidueDetails
AASP32
AASP228
BASP32
BASP228
CASP32
CASP228

site_idSWS_FT_FI2
Number of Residues21
DetailsMOD_RES: N6-acetyllysine => ECO:0000269|PubMed:17425515, ECO:0000269|PubMed:19011241
ChainResidueDetails
ALYS65
BLYS218
BLYS224
BLYS238
BLYS239
BLYS246
CLYS65
CLYS214
CLYS218
CLYS224
CLYS238
ALYS214
CLYS239
CLYS246
ALYS218
ALYS224
ALYS238
ALYS239
ALYS246
BLYS65
BLYS214

site_idSWS_FT_FI3
Number of Residues12
DetailsCARBOHYD: N-linked (GlcNAc...) asparagine => ECO:0000255
ChainResidueDetails
AASN92
CASN111
CASN162
CASN293
AASN111
AASN162
AASN293
BASN92
BASN111
BASN162
BASN293
CASN92

218853

PDB entries from 2024-04-24

PDB statisticsPDBj update infoContact PDBjnumon