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1YIX

Crystal structure of YCFH, TATD homolog from Escherichia coli K12, at 1.9 A resolution

Functional Information from GO Data
ChainGOidnamespacecontents
A0004536molecular_functionDNA nuclease activity
A0005515molecular_functionprotein binding
A0005829cellular_componentcytosol
A0006259biological_processDNA metabolic process
A0016787molecular_functionhydrolase activity
A0016788molecular_functionhydrolase activity, acting on ester bonds
A0046872molecular_functionmetal ion binding
B0004536molecular_functionDNA nuclease activity
B0005515molecular_functionprotein binding
B0005829cellular_componentcytosol
B0006259biological_processDNA metabolic process
B0016787molecular_functionhydrolase activity
B0016788molecular_functionhydrolase activity, acting on ester bonds
B0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE ZN A 601
ChainResidue
AHIS7
AHIS9
AGLU94
AHIS155
AASP205
AZN604

site_idAC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE ZN B 602
ChainResidue
BHIS155
BASP205
BZN603
BHIS7
BHIS9
BGLU94

site_idAC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE ZN B 603
ChainResidue
BGLU94
BHIS130
BHIS155
BZN602
BHOH636

site_idAC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE ZN A 604
ChainResidue
AGLU94
AHIS130
AHIS155
AZN601
AHOH863

Functional Information from PROSITE/UniProt
site_idPS01091
Number of Residues17
DetailsTATD_3 TatD deoxyribonuclease family signature 3. AAryVPldrLLVETDsP
ChainResidueDetails
AALA191-PRO207

site_idPS01137
Number of Residues9
DetailsTATD_1 TatD deoxyribonuclease family signature 1. LVDSHcHLD
ChainResidueDetails
ALEU3-ASP11

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues12
DetailsBINDING: BINDING => ECO:0000269|Ref.7
ChainResidueDetails
AHIS7
BHIS130
BHIS155
BASP205
AHIS9
AGLU94
AHIS130
AHIS155
AASP205
BHIS7
BHIS9
BGLU94

226707

PDB entries from 2024-10-30

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