1YDY
Crystal structure of periplasmic glycerophosphodiester phosphodiesterase from Escherichia coli
Functional Information from GO Data
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE CA B 903 |
| Chain | Residue |
| B | GLU63 |
| B | ASP65 |
| B | GLU171 |
| B | GOL901 |
| B | HOH906 |
| B | HOH1052 |
| site_id | AC2 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE CA A 904 |
| Chain | Residue |
| A | GOL902 |
| A | HOH905 |
| A | HOH1043 |
| A | GLU63 |
| A | ASP65 |
| A | GLU171 |
| site_id | AC3 |
| Number of Residues | 10 |
| Details | BINDING SITE FOR RESIDUE GOL B 901 |
| Chain | Residue |
| B | HIS36 |
| B | GLU63 |
| B | GLU171 |
| B | GLN208 |
| B | PHE210 |
| B | LEU235 |
| B | TYR313 |
| B | CA903 |
| B | HOH906 |
| B | HOH1104 |
| site_id | AC4 |
| Number of Residues | 11 |
| Details | BINDING SITE FOR RESIDUE GOL A 902 |
| Chain | Residue |
| A | HIS36 |
| A | GLU63 |
| A | GLU171 |
| A | GLN208 |
| A | PHE210 |
| A | LEU235 |
| A | TYR313 |
| A | CA904 |
| A | HOH905 |
| A | HOH1098 |
| A | HOH1185 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 648 |
| Details | Domain: {"description":"GP-PDE","evidences":[{"source":"PROSITE-ProRule","id":"PRU01041","evidenceCode":"ECO:0000255"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI2 |
| Number of Residues | 2 |
| Details | Active site: {"description":"Proton acceptor","evidences":[{"source":"UniProtKB","id":"Q8RB32","evidenceCode":"ECO:0000250"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI3 |
| Number of Residues | 2 |
| Details | Active site: {"description":"Proton donor","evidences":[{"source":"UniProtKB","id":"Q8RB32","evidenceCode":"ECO:0000250"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI4 |
| Number of Residues | 6 |
| Details | Binding site: {"evidences":[{"source":"Reference","evidenceCode":"ECO:0000269","citation":{"citationType":"submission","publicationDate":"JAN-2005","submissionDatabase":"PDB data bank","title":"Crystal structure of periplasmic glycerophosphodiester phosphodiesterase from Escherichia coli.","authoringGroup":["New York structural genomix research consortium (NYSGXRC)"]}},{"source":"PDB","id":"1T8Q","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1YDY","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
