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1Y44

Crystal structure of RNase Z

Functional Information from GO Data
ChainGOidnamespacecontents
A0004519molecular_functionendonuclease activity
A0008033biological_processtRNA processing
A0008270molecular_functionzinc ion binding
A0016891molecular_functionRNA endonuclease activity, producing 5'-phosphomonoesters
A0042780biological_processtRNA 3'-end processing
A0042781molecular_function3'-tRNA processing endoribonuclease activity
A0042802molecular_functionidentical protein binding
A0046872molecular_functionmetal ion binding
B0004519molecular_functionendonuclease activity
B0008033biological_processtRNA processing
B0008270molecular_functionzinc ion binding
B0016891molecular_functionRNA endonuclease activity, producing 5'-phosphomonoesters
B0042780biological_processtRNA 3'-end processing
B0042781molecular_function3'-tRNA processing endoribonuclease activity
B0042802molecular_functionidentical protein binding
B0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues7
DetailsBINDING SITE FOR RESIDUE ZN A 400
ChainResidue
AHIS63
AHIS65
AHIS140
AASP211
AZN401
APO4945
AHOH1007

site_idAC2
Number of Residues7
DetailsBINDING SITE FOR RESIDUE ZN A 401
ChainResidue
AASP211
AHIS269
AZN400
APO4945
AHOH1007
AASP67
AHIS68

site_idAC3
Number of Residues11
DetailsBINDING SITE FOR RESIDUE PO4 A 945
ChainResidue
AGLY11
AHIS65
AASP67
AHIS140
AASP211
AHIS247
AHIS269
AZN400
AZN401
AHOH948
AHOH1007

site_idAC4
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MES B 801
ChainResidue
BARG31
BARG54
BLYS55
BGLU57
BASP86
BHOH859

site_idAC5
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GOL B 601
ChainResidue
BLYS176
BVAL183
BTHR184
BPRO291
BASN292
BHOH861

site_idAC6
Number of Residues2
DetailsBINDING SITE FOR RESIDUE GOL A 602
ChainResidue
AHIS48
APHE299

site_idAC7
Number of Residues9
DetailsBINDING SITE FOR RESIDUE GOL A 603
ChainResidue
AARG31
AARG54
ALYS55
AILE56
AGLU57
AARG79
AASP86
AGLU87
AHOH983

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsACT_SITE: Proton acceptor => ECO:0000255|HAMAP-Rule:MF_01818, ECO:0000305|PubMed:15654328
ChainResidueDetails
AASP67
BASP67

site_idSWS_FT_FI2
Number of Residues6
DetailsBINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_01818, ECO:0000269|PubMed:15654328
ChainResidueDetails
AHIS63
AHIS65
AHIS140
BHIS63
BHIS65
BHIS140

site_idSWS_FT_FI3
Number of Residues8
DetailsBINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_01818, ECO:0000269|PubMed:15654328, ECO:0000269|PubMed:16518398
ChainResidueDetails
AASP67
AHIS68
AASP211
AHIS269
BASP67
BHIS68
BASP211
BHIS269

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PDB entries from 2024-07-10

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