Summary Structural details Experimental details Functional details Sequence Neighbor History Downloads

1Y2D

Catalytic Domain Of Human Phosphodiesterase 4D In Complex With 1-(4-methoxy-phenyl)-3,5-dimethyl-1H-pyrazole-4-carboxylic acid ethyl ester

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0004114	molecular_function	3',5'-cyclic-nucleotide phosphodiesterase activity
A	0007165	biological_process	signal transduction
A	0008081	molecular_function	phosphoric diester hydrolase activity
B	0004114	molecular_function	3',5'-cyclic-nucleotide phosphodiesterase activity
B	0007165	biological_process	signal transduction
B	0008081	molecular_function	phosphoric diester hydrolase activity

Functional Information from PDB Data

site_id	AC1
Number of Residues	6
Details	BINDING SITE FOR RESIDUE ZN A 1001

Chain	Residue
A	HIS164
A	HIS200
A	ASP201
A	ASP318
A	HOH1007
A	HOH1008

site_id	AC2
Number of Residues	6
Details	BINDING SITE FOR RESIDUE MG A 1002

Chain	Residue
A	HOH1005
A	HOH1006
A	HOH1007
A	ASP201
A	HOH1003
A	HOH1004

site_id	AC3
Number of Residues	7
Details	BINDING SITE FOR RESIDUE ZN B 1001

Chain	Residue
B	HIS164
B	HIS200
B	ASP201
B	ASP318
B	MG1002
B	HOH2007
B	HOH2008

site_id	AC4
Number of Residues	7
Details	BINDING SITE FOR RESIDUE MG B 1002

Chain	Residue
B	ASP201
B	ZN1001
B	HOH2003
B	HOH2004
B	HOH2005
B	HOH2006
B	HOH2007

site_id	AC5
Number of Residues	5
Details	BINDING SITE FOR RESIDUE 4DE A 601

Chain	Residue
A	MET273
A	THR333
A	MET357
A	GLN369
A	PHE372

site_id	AC6
Number of Residues	7
Details	BINDING SITE FOR RESIDUE 4DE B 602

Chain	Residue
B	ASN321
B	THR333
B	ILE336
B	MET357
B	GLN369
B	PHE372
B	HOH2266

site_id	AC7
Number of Residues	4
Details	BINDING SITE FOR RESIDUE EDO B 701

Chain	Residue
A	PRO411
B	GLU366
B	TYR406
B	HOH2068

site_id	AC8
Number of Residues	4
Details	BINDING SITE FOR RESIDUE EDO A 702

Chain	Residue
A	LYS262
A	ILE265
A	ASP266
A	HOH1020

site_id	AC9
Number of Residues	6
Details	BINDING SITE FOR RESIDUE EDO A 703

Chain	Residue
A	ASN209
A	GLN210
A	HOH1012
A	HOH1025
A	HOH1028
A	HOH1049

site_id	BC1
Number of Residues	3
Details	BINDING SITE FOR RESIDUE EDO B 704

Chain	Residue
B	SER208
B	PRO356
B	HOH2183

site_id	BC2
Number of Residues	5
Details	BINDING SITE FOR RESIDUE EDO A 705

Chain	Residue
A	PRO179
A	GLY296
A	HIS389
A	ASP391
A	HOH1228

site_id	BC3
Number of Residues	6
Details	BINDING SITE FOR RESIDUE EDO A 706

Chain	Residue
A	ASN115
A	ALA155
A	ASN161
A	ASN162
A	ARG335
A	HOH1219

site_id	BC4
Number of Residues	7
Details	BINDING SITE FOR RESIDUE EDO A 707

Chain	Residue
A	LEU175
A	THR178
A	TRP384
A	VAL388
A	ASP391
A	ALA392
A	HOH1147

site_id	BC5
Number of Residues	5
Details	BINDING SITE FOR RESIDUE EDO B 708

Chain	Residue
B	PHE238
B	ARG257
B	ARG261
B	HOH2081
B	HOH2098

site_id	BC6
Number of Residues	4
Details	BINDING SITE FOR RESIDUE EDO A 709

Chain	Residue
A	PHE238
A	ARG257
A	HOH1047
A	HOH1100

site_id	BC7
Number of Residues	4
Details	BINDING SITE FOR RESIDUE EDO A 710

Chain	Residue
A	SER208
A	PHE340
A	PRO356
A	HOH1064

site_id	BC8
Number of Residues	2
Details	BINDING SITE FOR RESIDUE EDO A 711

Chain	Residue
A	GLY371
A	PHE372

site_id	BC9
Number of Residues	4
Details	BINDING SITE FOR RESIDUE EDO B 712

Chain	Residue
B	LYS262
B	ILE265
B	ASP266
B	HOH2039

site_id	CC1
Number of Residues	8
Details	BINDING SITE FOR RESIDUE EDO B 713

Chain	Residue
B	HOH2180
B	GLU150
B	ASP151
B	TYR153
B	ASN162
B	EDO718
B	HOH2011
B	HOH2074

site_id	CC2
Number of Residues	5
Details	BINDING SITE FOR RESIDUE EDO B 714

Chain	Residue
B	ASP401
B	ASN402
B	HOH2012
B	HOH2108
B	HOH2181

site_id	CC3
Number of Residues	7
Details	BINDING SITE FOR RESIDUE EDO B 715

Chain	Residue
B	ASP156
B	VAL157
B	ALA158
B	GLU339
B	ARG342
B	HOH2025
B	HOH2060

site_id	CC4
Number of Residues	7
Details	BINDING SITE FOR RESIDUE EDO A 716

Chain	Residue
A	ILE213
A	ASN216
A	SER217
A	ALA220
A	LEU221
A	ASP225
B	ARG261

site_id	CC5
Number of Residues	3
Details	BINDING SITE FOR RESIDUE EDO A 717

Chain	Residue
A	HIS154
A	ASP203
A	PRO205

site_id	CC6
Number of Residues	5
Details	BINDING SITE FOR RESIDUE EDO B 718

Chain	Residue
B	ASN115
B	ALA155
B	ASN162
B	EDO713
B	HOH2074

site_id	CC7
Number of Residues	2
Details	BINDING SITE FOR RESIDUE EDO A 719

Chain	Residue
A	GLU366
A	HOH1081

site_id	CC8
Number of Residues	5
Details	BINDING SITE FOR RESIDUE EDO A 720

Chain	Residue
A	ALA183
A	VAL184
B	ASN115
B	ARG116
B	HOH2180

site_id	CC9
Number of Residues	4
Details	BINDING SITE FOR RESIDUE EDO B 721

Chain	Residue
A	HOH1079
B	GLN327
B	HOH2118
B	HOH2215

site_id	DC1
Number of Residues	4
Details	BINDING SITE FOR RESIDUE EDO B 722

Chain	Residue
A	ARG330
B	HOH2012
B	HOH2091
B	HOH2236

site_id	DC2
Number of Residues	5
Details	BINDING SITE FOR RESIDUE EDO B 723

Chain	Residue
B	THR178
B	TRP384
B	ASP391
B	EDO724
B	HOH2190

site_id	DC3
Number of Residues	5
Details	BINDING SITE FOR RESIDUE EDO B 724

Chain	Residue
B	ASP394
B	EDO723
B	HOH2126
B	HOH2142
B	HOH2256

site_id	DC4
Number of Residues	8
Details	BINDING SITE FOR RESIDUE B3P B 801

Chain	Residue
A	ASP397
A	ASP401
A	HOH1132
B	LYS94
B	GLU95
B	GLU97
B	ASP98
B	HIS105

Functional Information from PROSITE/UniProt

site_id	PS00126
Number of Residues	12
Details	PDEASE_I_1 3'5'-cyclic nucleotide phosphodiesterase domain signature. HDVdHpGvsNqF

Chain	Residue	Details
A	HIS200-PHE211

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	2
Details	Active site: {"description":"Proton donor","evidences":[{"source":"UniProtKB","id":"Q07343","evidenceCode":"ECO:0000250"}]}

Chain

Residue

Details

site_id	SWS_FT_FI2
Number of Residues	6
Details	Binding site: {"evidences":[{"source":"PubMed","id":"14609333","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"15260978","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"1PTW","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1TB7","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

site_id	SWS_FT_FI3
Number of Residues	2
Details	Binding site: {"evidences":[{"source":"PubMed","id":"14609333","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"15260978","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"15576036","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"17582435","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"1PTW","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1TB7","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1TBB","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1XOM","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1XON","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1XOQ","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"2PW3","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

site_id	SWS_FT_FI4
Number of Residues	4
Details	Binding site: {"evidences":[{"source":"PubMed","id":"14609333","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"15260978","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"15576036","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"17582435","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"1PTW","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1TB7","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1TBB","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1XOM","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1XON","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1XOQ","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1XOR","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"2PW3","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

site_id	SWS_FT_FI5
Number of Residues	4
Details	Binding site: {"evidences":[{"source":"PubMed","id":"14609333","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"1PTW","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

		Sequence (fasta)
		PDBx/mmCIF
		PDBML format (no-atom)
		PDB format (full)
		Validation report (PDF)
		EDMap 2fo-fc (MTZ)