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1Y2D

Catalytic Domain Of Human Phosphodiesterase 4D In Complex With 1-(4-methoxy-phenyl)-3,5-dimethyl-1H-pyrazole-4-carboxylic acid ethyl ester

Functional Information from GO Data
ChainGOidnamespacecontents
A0004114molecular_function3',5'-cyclic-nucleotide phosphodiesterase activity
A0007165biological_processsignal transduction
A0008081molecular_functionphosphoric diester hydrolase activity
B0004114molecular_function3',5'-cyclic-nucleotide phosphodiesterase activity
B0007165biological_processsignal transduction
B0008081molecular_functionphosphoric diester hydrolase activity
Functional Information from PDB Data
site_idAC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE ZN A 1001
ChainResidue
AHIS164
AHIS200
AASP201
AASP318
AHOH1007
AHOH1008

site_idAC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG A 1002
ChainResidue
AHOH1005
AHOH1006
AHOH1007
AASP201
AHOH1003
AHOH1004

site_idAC3
Number of Residues7
DetailsBINDING SITE FOR RESIDUE ZN B 1001
ChainResidue
BHIS164
BHIS200
BASP201
BASP318
BMG1002
BHOH2007
BHOH2008

site_idAC4
Number of Residues7
DetailsBINDING SITE FOR RESIDUE MG B 1002
ChainResidue
BASP201
BZN1001
BHOH2003
BHOH2004
BHOH2005
BHOH2006
BHOH2007

site_idAC5
Number of Residues5
DetailsBINDING SITE FOR RESIDUE 4DE A 601
ChainResidue
AMET273
ATHR333
AMET357
AGLN369
APHE372

site_idAC6
Number of Residues7
DetailsBINDING SITE FOR RESIDUE 4DE B 602
ChainResidue
BASN321
BTHR333
BILE336
BMET357
BGLN369
BPHE372
BHOH2266

site_idAC7
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO B 701
ChainResidue
APRO411
BGLU366
BTYR406
BHOH2068

site_idAC8
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO A 702
ChainResidue
ALYS262
AILE265
AASP266
AHOH1020

site_idAC9
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO A 703
ChainResidue
AASN209
AGLN210
AHOH1012
AHOH1025
AHOH1028
AHOH1049

site_idBC1
Number of Residues3
DetailsBINDING SITE FOR RESIDUE EDO B 704
ChainResidue
BSER208
BPRO356
BHOH2183

site_idBC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO A 705
ChainResidue
APRO179
AGLY296
AHIS389
AASP391
AHOH1228

site_idBC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO A 706
ChainResidue
AASN115
AALA155
AASN161
AASN162
AARG335
AHOH1219

site_idBC4
Number of Residues7
DetailsBINDING SITE FOR RESIDUE EDO A 707
ChainResidue
ALEU175
ATHR178
ATRP384
AVAL388
AASP391
AALA392
AHOH1147

site_idBC5
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO B 708
ChainResidue
BPHE238
BARG257
BARG261
BHOH2081
BHOH2098

site_idBC6
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO A 709
ChainResidue
APHE238
AARG257
AHOH1047
AHOH1100

site_idBC7
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO A 710
ChainResidue
ASER208
APHE340
APRO356
AHOH1064

site_idBC8
Number of Residues2
DetailsBINDING SITE FOR RESIDUE EDO A 711
ChainResidue
AGLY371
APHE372

site_idBC9
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO B 712
ChainResidue
BLYS262
BILE265
BASP266
BHOH2039

site_idCC1
Number of Residues8
DetailsBINDING SITE FOR RESIDUE EDO B 713
ChainResidue
BHOH2180
BGLU150
BASP151
BTYR153
BASN162
BEDO718
BHOH2011
BHOH2074

site_idCC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO B 714
ChainResidue
BASP401
BASN402
BHOH2012
BHOH2108
BHOH2181

site_idCC3
Number of Residues7
DetailsBINDING SITE FOR RESIDUE EDO B 715
ChainResidue
BASP156
BVAL157
BALA158
BGLU339
BARG342
BHOH2025
BHOH2060

site_idCC4
Number of Residues7
DetailsBINDING SITE FOR RESIDUE EDO A 716
ChainResidue
AILE213
AASN216
ASER217
AALA220
ALEU221
AASP225
BARG261

site_idCC5
Number of Residues3
DetailsBINDING SITE FOR RESIDUE EDO A 717
ChainResidue
AHIS154
AASP203
APRO205

site_idCC6
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO B 718
ChainResidue
BASN115
BALA155
BASN162
BEDO713
BHOH2074

site_idCC7
Number of Residues2
DetailsBINDING SITE FOR RESIDUE EDO A 719
ChainResidue
AGLU366
AHOH1081

site_idCC8
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO A 720
ChainResidue
AALA183
AVAL184
BASN115
BARG116
BHOH2180

site_idCC9
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO B 721
ChainResidue
AHOH1079
BGLN327
BHOH2118
BHOH2215

site_idDC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO B 722
ChainResidue
AARG330
BHOH2012
BHOH2091
BHOH2236

site_idDC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO B 723
ChainResidue
BTHR178
BTRP384
BASP391
BEDO724
BHOH2190

site_idDC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO B 724
ChainResidue
BASP394
BEDO723
BHOH2126
BHOH2142
BHOH2256

site_idDC4
Number of Residues8
DetailsBINDING SITE FOR RESIDUE B3P B 801
ChainResidue
AASP397
AASP401
AHOH1132
BLYS94
BGLU95
BGLU97
BASP98
BHIS105

Functional Information from PROSITE/UniProt
site_idPS00126
Number of Residues12
DetailsPDEASE_I_1 3'5'-cyclic nucleotide phosphodiesterase domain signature. HDVdHpGvsNqF
ChainResidueDetails
AHIS200-PHE211

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsACT_SITE: Proton donor => ECO:0000250|UniProtKB:Q07343
ChainResidueDetails
AHIS160
BHIS160

site_idSWS_FT_FI2
Number of Residues6
DetailsBINDING: BINDING => ECO:0000269|PubMed:14609333, ECO:0000269|PubMed:15260978, ECO:0007744|PDB:1PTW, ECO:0007744|PDB:1TB7
ChainResidueDetails
AHIS160
AASN321
AGLN369
BHIS160
BASN321
BGLN369

site_idSWS_FT_FI3
Number of Residues2
DetailsBINDING: BINDING => ECO:0000269|PubMed:14609333, ECO:0000269|PubMed:15260978, ECO:0000269|PubMed:15576036, ECO:0000269|PubMed:17582435, ECO:0007744|PDB:1PTW, ECO:0007744|PDB:1TB7, ECO:0007744|PDB:1TBB, ECO:0007744|PDB:1XOM, ECO:0007744|PDB:1XON, ECO:0007744|PDB:1XOQ, ECO:0007744|PDB:2PW3
ChainResidueDetails
AHIS164
BHIS164

site_idSWS_FT_FI4
Number of Residues4
DetailsBINDING: BINDING => ECO:0000269|PubMed:14609333, ECO:0000269|PubMed:15260978, ECO:0000269|PubMed:15576036, ECO:0000269|PubMed:17582435, ECO:0007744|PDB:1PTW, ECO:0007744|PDB:1TB7, ECO:0007744|PDB:1TBB, ECO:0007744|PDB:1XOM, ECO:0007744|PDB:1XON, ECO:0007744|PDB:1XOQ, ECO:0007744|PDB:1XOR, ECO:0007744|PDB:2PW3
ChainResidueDetails
AHIS200
AASP318
BHIS200
BASP318

site_idSWS_FT_FI5
Number of Residues4
DetailsBINDING: BINDING => ECO:0000269|PubMed:14609333, ECO:0007744|PDB:1PTW
ChainResidueDetails
AASP201
APHE372
BASP201
BPHE372

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PDB entries from 2024-07-17

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