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1XFP

Crystal structure of the CDR2 germline reversion mutant of cAb-Lys3 in complex with hen egg white lysozyme

Functional Information from GO Data
ChainGOidnamespacecontents
L0003796molecular_functionlysozyme activity
L0005515molecular_functionprotein binding
L0005576cellular_componentextracellular region
L0005615cellular_componentextracellular space
L0005737cellular_componentcytoplasm
L0005783cellular_componentendoplasmic reticulum
L0016231molecular_functionbeta-N-acetylglucosaminidase activity
L0016798molecular_functionhydrolase activity, acting on glycosyl bonds
L0016998biological_processcell wall macromolecule catabolic process
L0031640biological_processkilling of cells of another organism
L0042742biological_processdefense response to bacterium
L0042802molecular_functionidentical protein binding
L0050829biological_processdefense response to Gram-negative bacterium
L0050830biological_processdefense response to Gram-positive bacterium
L0051672biological_processobsolete catabolism by organism of cell wall peptidoglycan in other organism
Functional Information from PDB Data
site_idAC1
Number of Residues10
DetailsBINDING SITE FOR RESIDUE FMT L 402
ChainResidue
LASN65
LHOH454
LASP66
LGLY67
LARG68
LTHR69
LPRO70
LSER72
LHOH416
LHOH421

site_idAC2
Number of Residues9
DetailsBINDING SITE FOR RESIDUE FMT A 403
ChainResidue
AALA6
ATYR94
ATYR95
ACYS96
AGLY124
AGLN125
AGLY126
ATHR127
AHOH426

site_idAC3
Number of Residues7
DetailsBINDING SITE FOR RESIDUE FMT L 404
ChainResidue
ASER105
AHOH432
LGLU35
LVAL109
LALA110
LHOH420
LHOH426

site_idAC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE FMT L 405
ChainResidue
AGLN39
AHOH455
LTYR20
LARG21
LHOH487

site_idAC5
Number of Residues5
DetailsBINDING SITE FOR RESIDUE FMT L 406
ChainResidue
LTYR20
LLYS96
LLYS97
LSER100
LHOH468

site_idAC6
Number of Residues3
DetailsBINDING SITE FOR RESIDUE FMT L 407
ChainResidue
ATYR106
LASN46
LTHR47

site_idAC7
Number of Residues5
DetailsBINDING SITE FOR RESIDUE FMT L 408
ChainResidue
LGLY4
LARG5
LCYS6
LGLU7
LFMT409

site_idAC8
Number of Residues3
DetailsBINDING SITE FOR RESIDUE FMT L 409
ChainResidue
AILE29
LARG5
LFMT408

Functional Information from PROSITE/UniProt
site_idPS00128
Number of Residues19
DetailsGLYCOSYL_HYDROL_F22_1 Glycosyl hydrolases family 22 (GH22) domain signature. CnipCsaLlssDItasvnC
ChainResidueDetails
LCYS76-CYS94

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsACT_SITE:
ChainResidueDetails
LGLU35
LASP52

site_idSWS_FT_FI2
Number of Residues1
DetailsBINDING:
ChainResidueDetails
LASP101

Catalytic Information from CSA
site_idCSA1
Number of Residues2
DetailsAnnotated By Reference To The Literature 132l
ChainResidueDetails
LGLU35
LASP52

site_idMCSA1
Number of Residues6
DetailsM-CSA 203
ChainResidueDetails
LGLU35hydrogen bond acceptor, hydrogen bond donor, proton acceptor, proton donor
LASN46
LASP48
LSER50
LASP52covalently attached, electrostatic stabiliser, nucleofuge, nucleophile, polar/non-polar interaction
LASN59

224004

PDB entries from 2024-08-21

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