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1XDS

Crystal structure of Aclacinomycin-10-hydroxylase (RdmB) in complex with S-adenosyl-L-methionine (SAM) and 11-deoxy-beta-rhodomycin (DbrA)

Functional Information from GO Data
ChainGOidnamespacecontents
A0008168molecular_functionmethyltransferase activity
A0008171molecular_functionO-methyltransferase activity
A0016829molecular_functionlyase activity
A0016831molecular_functioncarboxy-lyase activity
A0017000biological_processantibiotic biosynthetic process
B0008168molecular_functionmethyltransferase activity
B0008171molecular_functionO-methyltransferase activity
B0016829molecular_functionlyase activity
B0016831molecular_functioncarboxy-lyase activity
B0017000biological_processantibiotic biosynthetic process
Functional Information from PDB Data
site_idAC1
Number of Residues18
DetailsBINDING SITE FOR RESIDUE SAM A 5635
ChainResidue
ATRP146
ASER255
APHE256
AASN260
ADRA5600
AHOH5640
AHOH5649
AHOH5654
AHOH5674
AHOH5688
AGLY190
AGLY191
AGLU213
ALEU214
APRO217
AGLY239
AASP240
APHE241

site_idAC2
Number of Residues15
DetailsBINDING SITE FOR RESIDUE SAM B 9635
ChainResidue
BGLY190
BGLY191
BGLU213
BPRO217
BASP240
BPHE241
BSER255
BPHE256
BASN260
BTRP261
BDRA9600
BHOH9644
BHOH9647
BHOH9671
BHOH9690

site_idAC3
Number of Residues14
DetailsBINDING SITE FOR RESIDUE DRA A 5600
ChainResidue
ATRP109
AVAL116
APHE145
APHE159
AMSE163
AMSE196
APHE256
AASN260
ALEU304
AARG307
AMSE308
AMSE312
APHE346
ASAM5635

site_idAC4
Number of Residues17
DetailsBINDING SITE FOR RESIDUE DRA B 9600
ChainResidue
BTRP109
BVAL116
BPHE145
BPHE159
BMSE163
BALA173
BPRO174
BPHE256
BASN260
BMSE308
BPHE311
BMSE312
BLEU344
BPHE346
BPHE348
BSAM9635
BHOH9688

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues8
DetailsBINDING: BINDING => ECO:0000269|PubMed:14607118, ECO:0000269|PubMed:15548527
ChainResidueDetails
ATYR171
AGLY190
AGLU213
ASER255
BTYR171
BGLY190
BGLU213
BSER255

site_idSWS_FT_FI2
Number of Residues2
DetailsBINDING:
ChainResidueDetails
AASP240
BASP240

site_idSWS_FT_FI3
Number of Residues2
DetailsBINDING: BINDING => ECO:0000269|PubMed:15548527
ChainResidueDetails
AASN260
BASN260

Catalytic Information from CSA
site_idCSA1
Number of Residues1
DetailsAnnotated By Reference To The Literature 1kyw
ChainResidueDetails
ALEU259

site_idCSA2
Number of Residues1
DetailsAnnotated By Reference To The Literature 1kyw
ChainResidueDetails
BLEU259

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PDB entries from 2024-07-10

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