1X6M
Crystal structure of the glutathione-dependent formaldehyde-activating enzyme (Gfa)
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0008270 | molecular_function | zinc ion binding |
A | 0016829 | molecular_function | lyase activity |
A | 0016846 | molecular_function | carbon-sulfur lyase activity |
A | 0046294 | biological_process | formaldehyde catabolic process |
A | 0046872 | molecular_function | metal ion binding |
A | 0051907 | molecular_function | S-(hydroxymethyl)glutathione synthase activity |
B | 0008270 | molecular_function | zinc ion binding |
B | 0016829 | molecular_function | lyase activity |
B | 0016846 | molecular_function | carbon-sulfur lyase activity |
B | 0046294 | biological_process | formaldehyde catabolic process |
B | 0046872 | molecular_function | metal ion binding |
B | 0051907 | molecular_function | S-(hydroxymethyl)glutathione synthase activity |
C | 0008270 | molecular_function | zinc ion binding |
C | 0016829 | molecular_function | lyase activity |
C | 0016846 | molecular_function | carbon-sulfur lyase activity |
C | 0046294 | biological_process | formaldehyde catabolic process |
C | 0046872 | molecular_function | metal ion binding |
C | 0051907 | molecular_function | S-(hydroxymethyl)glutathione synthase activity |
D | 0008270 | molecular_function | zinc ion binding |
D | 0016829 | molecular_function | lyase activity |
D | 0016846 | molecular_function | carbon-sulfur lyase activity |
D | 0046294 | biological_process | formaldehyde catabolic process |
D | 0046872 | molecular_function | metal ion binding |
D | 0051907 | molecular_function | S-(hydroxymethyl)glutathione synthase activity |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE ZN A 200 |
Chain | Residue |
A | CYS33 |
A | CYS35 |
A | CYS101 |
A | CYS104 |
site_id | AC2 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE ZN A 201 |
Chain | Residue |
A | CYS54 |
A | CYS56 |
A | CYS59 |
site_id | AC3 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE ZN B 200 |
Chain | Residue |
B | CYS101 |
B | CYS104 |
B | CYS33 |
B | CYS35 |
site_id | AC4 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE ZN B 201 |
Chain | Residue |
B | CYS54 |
B | CYS56 |
B | CYS59 |
site_id | AC5 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE ZN C 200 |
Chain | Residue |
C | CYS33 |
C | CYS35 |
C | CYS101 |
C | CYS104 |
site_id | AC6 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE ZN C 201 |
Chain | Residue |
C | CYS54 |
C | CYS56 |
C | CYS59 |
site_id | AC7 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE ZN D 200 |
Chain | Residue |
D | CYS33 |
D | CYS35 |
D | CYS101 |
D | CYS104 |
site_id | AC8 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE ZN D 201 |
Chain | Residue |
D | CYS54 |
D | CYS56 |
D | CYS59 |
site_id | AC9 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE SO4 A 501 |
Chain | Residue |
A | ALA94 |
A | PRO95 |
A | ILE96 |
A | ARG98 |
A | HOH583 |
site_id | BC1 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE SO4 B 502 |
Chain | Residue |
B | LYS58 |
B | ALA94 |
B | PRO95 |
B | ILE96 |
B | ARG98 |
B | GOL601 |
B | HOH662 |
site_id | BC2 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE SO4 C 503 |
Chain | Residue |
C | LYS58 |
C | PRO95 |
C | ILE96 |
C | ARG98 |
site_id | BC3 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE SO4 C 504 |
Chain | Residue |
C | ALA14 |
C | LYS20 |
C | GLN69 |
C | GLU128 |
C | HOH640 |
site_id | BC4 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE SO4 D 505 |
Chain | Residue |
D | LYS58 |
D | ALA94 |
D | PRO95 |
D | ILE96 |
D | ARG98 |
site_id | BC5 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE SO4 D 506 |
Chain | Residue |
D | ALA14 |
D | LYS20 |
D | GLN69 |
D | GLU128 |
D | HOH619 |
D | HOH635 |
site_id | BC6 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE SO4 D 507 |
Chain | Residue |
A | PRO177 |
D | ARG161 |
D | ARG165 |
D | HOH636 |
site_id | BC7 |
Number of Residues | 9 |
Details | BINDING SITE FOR RESIDUE GOL B 601 |
Chain | Residue |
B | LYS58 |
B | VAL90 |
B | ASN91 |
B | ALA94 |
B | ILE96 |
B | ARG98 |
B | SO4502 |
B | HOH610 |
B | HOH631 |
site_id | BC8 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE GOL B 602 |
Chain | Residue |
B | ALA14 |
B | GLN69 |
B | GLU128 |
B | HOH625 |
B | HOH646 |
site_id | BC9 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE GOL B 603 |
Chain | Residue |
B | GLN47 |
B | VAL73 |
B | GLY74 |
B | HOH638 |
site_id | CC1 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE GOL C 604 |
Chain | Residue |
C | LEU179 |
C | ALA182 |
C | HOH605 |
C | HOH635 |
C | HOH641 |
site_id | CC2 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE GOL D 605 |
Chain | Residue |
D | PRO118 |
D | LEU122 |
D | LEU179 |
D | ALA182 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 28 |
Details | BINDING: BINDING => ECO:0000255|PROSITE-ProRule:PRU01239 |
Chain | Residue | Details |
A | LYS34 | |
B | GLY55 | |
B | THR57 | |
B | TRP60 | |
B | ARG102 | |
B | GLY105 | |
C | LYS34 | |
C | SER36 | |
C | GLY55 | |
C | THR57 | |
C | TRP60 | |
A | SER36 | |
C | ARG102 | |
C | GLY105 | |
D | LYS34 | |
D | SER36 | |
D | GLY55 | |
D | THR57 | |
D | TRP60 | |
D | ARG102 | |
D | GLY105 | |
A | GLY55 | |
A | THR57 | |
A | TRP60 | |
A | ARG102 | |
A | GLY105 | |
B | LYS34 | |
B | SER36 |
Catalytic Information from CSA
site_id | MCSA1 |
Number of Residues | 3 |
Details | M-CSA 712 |
Chain | Residue | Details |
A | GLY55 | metal ligand |
A | THR57 | metal ligand, nucleofuge, nucleophile |
A | TRP60 | metal ligand |
site_id | MCSA2 |
Number of Residues | 3 |
Details | M-CSA 712 |
Chain | Residue | Details |
B | GLY55 | metal ligand |
B | THR57 | metal ligand, nucleofuge, nucleophile |
B | TRP60 | metal ligand |
site_id | MCSA3 |
Number of Residues | 3 |
Details | M-CSA 712 |
Chain | Residue | Details |
C | GLY55 | metal ligand |
C | THR57 | metal ligand, nucleofuge, nucleophile |
C | TRP60 | metal ligand |
site_id | MCSA4 |
Number of Residues | 3 |
Details | M-CSA 712 |
Chain | Residue | Details |
D | GLY55 | metal ligand |
D | THR57 | metal ligand, nucleofuge, nucleophile |
D | TRP60 | metal ligand |