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1X6M

Crystal structure of the glutathione-dependent formaldehyde-activating enzyme (Gfa)

Functional Information from GO Data
ChainGOidnamespacecontents
A0008270molecular_functionzinc ion binding
A0016829molecular_functionlyase activity
A0016846molecular_functioncarbon-sulfur lyase activity
A0046294biological_processformaldehyde catabolic process
A0046872molecular_functionmetal ion binding
A0051907molecular_functionS-(hydroxymethyl)glutathione synthase activity
B0008270molecular_functionzinc ion binding
B0016829molecular_functionlyase activity
B0016846molecular_functioncarbon-sulfur lyase activity
B0046294biological_processformaldehyde catabolic process
B0046872molecular_functionmetal ion binding
B0051907molecular_functionS-(hydroxymethyl)glutathione synthase activity
C0008270molecular_functionzinc ion binding
C0016829molecular_functionlyase activity
C0016846molecular_functioncarbon-sulfur lyase activity
C0046294biological_processformaldehyde catabolic process
C0046872molecular_functionmetal ion binding
C0051907molecular_functionS-(hydroxymethyl)glutathione synthase activity
D0008270molecular_functionzinc ion binding
D0016829molecular_functionlyase activity
D0016846molecular_functioncarbon-sulfur lyase activity
D0046294biological_processformaldehyde catabolic process
D0046872molecular_functionmetal ion binding
D0051907molecular_functionS-(hydroxymethyl)glutathione synthase activity
Functional Information from PDB Data
site_idAC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN A 200
ChainResidue
ACYS33
ACYS35
ACYS101
ACYS104

site_idAC2
Number of Residues3
DetailsBINDING SITE FOR RESIDUE ZN A 201
ChainResidue
ACYS54
ACYS56
ACYS59

site_idAC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN B 200
ChainResidue
BCYS101
BCYS104
BCYS33
BCYS35

site_idAC4
Number of Residues3
DetailsBINDING SITE FOR RESIDUE ZN B 201
ChainResidue
BCYS54
BCYS56
BCYS59

site_idAC5
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN C 200
ChainResidue
CCYS33
CCYS35
CCYS101
CCYS104

site_idAC6
Number of Residues3
DetailsBINDING SITE FOR RESIDUE ZN C 201
ChainResidue
CCYS54
CCYS56
CCYS59

site_idAC7
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN D 200
ChainResidue
DCYS33
DCYS35
DCYS101
DCYS104

site_idAC8
Number of Residues3
DetailsBINDING SITE FOR RESIDUE ZN D 201
ChainResidue
DCYS54
DCYS56
DCYS59

site_idAC9
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 A 501
ChainResidue
AALA94
APRO95
AILE96
AARG98
AHOH583

site_idBC1
Number of Residues7
DetailsBINDING SITE FOR RESIDUE SO4 B 502
ChainResidue
BLYS58
BALA94
BPRO95
BILE96
BARG98
BGOL601
BHOH662

site_idBC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 C 503
ChainResidue
CLYS58
CPRO95
CILE96
CARG98

site_idBC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 C 504
ChainResidue
CALA14
CLYS20
CGLN69
CGLU128
CHOH640

site_idBC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 D 505
ChainResidue
DLYS58
DALA94
DPRO95
DILE96
DARG98

site_idBC5
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SO4 D 506
ChainResidue
DALA14
DLYS20
DGLN69
DGLU128
DHOH619
DHOH635

site_idBC6
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 D 507
ChainResidue
APRO177
DARG161
DARG165
DHOH636

site_idBC7
Number of Residues9
DetailsBINDING SITE FOR RESIDUE GOL B 601
ChainResidue
BLYS58
BVAL90
BASN91
BALA94
BILE96
BARG98
BSO4502
BHOH610
BHOH631

site_idBC8
Number of Residues5
DetailsBINDING SITE FOR RESIDUE GOL B 602
ChainResidue
BALA14
BGLN69
BGLU128
BHOH625
BHOH646

site_idBC9
Number of Residues4
DetailsBINDING SITE FOR RESIDUE GOL B 603
ChainResidue
BGLN47
BVAL73
BGLY74
BHOH638

site_idCC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE GOL C 604
ChainResidue
CLEU179
CALA182
CHOH605
CHOH635
CHOH641

site_idCC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE GOL D 605
ChainResidue
DPRO118
DLEU122
DLEU179
DALA182

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues28
DetailsBINDING: BINDING => ECO:0000255|PROSITE-ProRule:PRU01239
ChainResidueDetails
ALYS34
BGLY55
BTHR57
BTRP60
BARG102
BGLY105
CLYS34
CSER36
CGLY55
CTHR57
CTRP60
ASER36
CARG102
CGLY105
DLYS34
DSER36
DGLY55
DTHR57
DTRP60
DARG102
DGLY105
AGLY55
ATHR57
ATRP60
AARG102
AGLY105
BLYS34
BSER36

Catalytic Information from CSA
site_idMCSA1
Number of Residues3
DetailsM-CSA 712
ChainResidueDetails
AGLY55metal ligand
ATHR57metal ligand, nucleofuge, nucleophile
ATRP60metal ligand

site_idMCSA2
Number of Residues3
DetailsM-CSA 712
ChainResidueDetails
BGLY55metal ligand
BTHR57metal ligand, nucleofuge, nucleophile
BTRP60metal ligand

site_idMCSA3
Number of Residues3
DetailsM-CSA 712
ChainResidueDetails
CGLY55metal ligand
CTHR57metal ligand, nucleofuge, nucleophile
CTRP60metal ligand

site_idMCSA4
Number of Residues3
DetailsM-CSA 712
ChainResidueDetails
DGLY55metal ligand
DTHR57metal ligand, nucleofuge, nucleophile
DTRP60metal ligand

225158

PDB entries from 2024-09-18

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