1W19
Lumazine Synthase from Mycobacterium tuberculosis bound to 3-(1,3,7- trihydro-9-D-ribityl-2,6,8-purinetrione-7-yl)propane 1-phosphate
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0000906 | molecular_function | 6,7-dimethyl-8-ribityllumazine synthase activity |
A | 0005829 | cellular_component | cytosol |
A | 0009231 | biological_process | riboflavin biosynthetic process |
A | 0009349 | cellular_component | riboflavin synthase complex |
A | 0016740 | molecular_function | transferase activity |
B | 0000906 | molecular_function | 6,7-dimethyl-8-ribityllumazine synthase activity |
B | 0005829 | cellular_component | cytosol |
B | 0009231 | biological_process | riboflavin biosynthetic process |
B | 0009349 | cellular_component | riboflavin synthase complex |
B | 0016740 | molecular_function | transferase activity |
C | 0000906 | molecular_function | 6,7-dimethyl-8-ribityllumazine synthase activity |
C | 0005829 | cellular_component | cytosol |
C | 0009231 | biological_process | riboflavin biosynthetic process |
C | 0009349 | cellular_component | riboflavin synthase complex |
C | 0016740 | molecular_function | transferase activity |
D | 0000906 | molecular_function | 6,7-dimethyl-8-ribityllumazine synthase activity |
D | 0005829 | cellular_component | cytosol |
D | 0009231 | biological_process | riboflavin biosynthetic process |
D | 0009349 | cellular_component | riboflavin synthase complex |
D | 0016740 | molecular_function | transferase activity |
E | 0000906 | molecular_function | 6,7-dimethyl-8-ribityllumazine synthase activity |
E | 0005829 | cellular_component | cytosol |
E | 0009231 | biological_process | riboflavin biosynthetic process |
E | 0009349 | cellular_component | riboflavin synthase complex |
E | 0016740 | molecular_function | transferase activity |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE K A1164 |
Chain | Residue |
A | ALA70 |
A | HIS73 |
A | THR110 |
A | HOH2033 |
A | HOH2056 |
A | HOH2092 |
site_id | AC2 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE K A1165 |
Chain | Residue |
A | GLY130 |
A | ASP137 |
A | HOH2021 |
B | HOH2026 |
A | ALA34 |
A | GLY38 |
A | ALA129 |
site_id | AC3 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE K A1166 |
Chain | Residue |
A | GLU155 |
A | LEU156 |
A | ARG157 |
A | HIS159 |
site_id | AC4 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE K B1164 |
Chain | Residue |
B | ALA70 |
B | HIS73 |
B | THR110 |
B | HOH2044 |
B | HOH2058 |
B | HOH2086 |
site_id | AC5 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE K B1165 |
Chain | Residue |
B | ALA34 |
B | GLY38 |
B | ALA129 |
B | GLY130 |
B | ASP137 |
B | HOH2015 |
B | HOH2017 |
site_id | AC6 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE K B1166 |
Chain | Residue |
B | GLU155 |
B | LEU156 |
B | ARG157 |
B | HOH2126 |
E | LEU156 |
E | ARG157 |
E | HOH2127 |
site_id | AC7 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE K C1163 |
Chain | Residue |
C | ALA70 |
C | HIS73 |
C | THR110 |
C | HOH2036 |
C | HOH2039 |
C | HOH2067 |
site_id | AC8 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE K C1164 |
Chain | Residue |
C | ALA34 |
C | ALA129 |
C | GLY130 |
C | ASP137 |
C | HOH2010 |
C | HOH2091 |
site_id | AC9 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE K C1165 |
Chain | Residue |
C | LEU156 |
C | ARG157 |
D | GLU155 |
D | LEU156 |
D | ARG157 |
D | HOH2118 |
site_id | BC1 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE K D1164 |
Chain | Residue |
D | ALA70 |
D | HIS73 |
D | THR110 |
D | HOH2027 |
D | HOH2052 |
D | HOH2085 |
site_id | BC2 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE K D1165 |
Chain | Residue |
D | ALA34 |
D | ALA129 |
D | GLY130 |
D | ASP137 |
D | HOH2018 |
D | HOH2019 |
site_id | BC3 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE K E1164 |
Chain | Residue |
E | ALA70 |
E | HIS73 |
E | THR110 |
E | HOH2029 |
E | HOH2060 |
E | HOH2088 |
site_id | BC4 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE K E1165 |
Chain | Residue |
E | ALA34 |
E | ALA129 |
E | GLY130 |
E | ASP137 |
E | HOH2021 |
E | HOH2022 |
site_id | BC5 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE DTU A1162 |
Chain | Residue |
A | ASP14 |
A | CYS46 |
A | ALA148 |
site_id | BC6 |
Number of Residues | 23 |
Details | BINDING SITE FOR RESIDUE T1P A1163 |
Chain | Residue |
A | HOH2136 |
B | ALA113 |
B | ASN114 |
B | ARG128 |
B | LYS138 |
B | HOH2117 |
A | TRP27 |
A | HIS28 |
A | ALA59 |
A | ILE60 |
A | GLU61 |
A | VAL81 |
A | VAL82 |
A | ILE83 |
A | GLY85 |
A | GLN86 |
A | THR87 |
A | HIS89 |
A | HOH2063 |
A | HOH2132 |
A | HOH2133 |
A | HOH2134 |
A | HOH2135 |
site_id | BC7 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE DTU B1162 |
Chain | Residue |
B | CYS46 |
B | VAL144 |
B | ALA148 |
site_id | BC8 |
Number of Residues | 22 |
Details | BINDING SITE FOR RESIDUE T2P B1163 |
Chain | Residue |
B | TRP27 |
B | GLY58 |
B | ALA59 |
B | ILE60 |
B | GLU61 |
B | VAL81 |
B | VAL82 |
B | ILE83 |
B | GLY85 |
B | GLN86 |
B | THR87 |
B | HIS89 |
B | HOH2004 |
B | HOH2066 |
B | HOH2130 |
B | HOH2131 |
B | HOH2132 |
C | ALA113 |
C | ASN114 |
C | ARG128 |
C | LYS138 |
C | HOH2090 |
site_id | BC9 |
Number of Residues | 2 |
Details | BINDING SITE FOR RESIDUE DTV C1161 |
Chain | Residue |
C | CYS46 |
C | LEU151 |
site_id | CC1 |
Number of Residues | 23 |
Details | BINDING SITE FOR RESIDUE T5P C1162 |
Chain | Residue |
C | TRP27 |
C | HIS28 |
C | GLY58 |
C | ALA59 |
C | ILE60 |
C | GLU61 |
C | VAL81 |
C | VAL82 |
C | ILE83 |
C | GLY85 |
C | THR87 |
C | HIS89 |
C | HOH2043 |
C | HOH2104 |
C | HOH2105 |
C | HOH2106 |
C | HOH2107 |
C | HOH2108 |
D | ALA113 |
D | ASN114 |
D | ARG128 |
D | LYS138 |
D | HOH2105 |
site_id | CC2 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE DTV D1162 |
Chain | Residue |
D | ASP14 |
D | ALA15 |
D | CYS46 |
D | LEU147 |
D | LEU151 |
site_id | CC3 |
Number of Residues | 23 |
Details | BINDING SITE FOR RESIDUE T4P D1163 |
Chain | Residue |
D | TRP27 |
D | HIS28 |
D | GLY58 |
D | ALA59 |
D | ILE60 |
D | GLU61 |
D | VAL81 |
D | VAL82 |
D | ILE83 |
D | GLY85 |
D | GLN86 |
D | THR87 |
D | HIS89 |
D | HOH2006 |
D | HOH2008 |
D | HOH2057 |
D | HOH2121 |
D | HOH2122 |
E | ALA113 |
E | ASN114 |
E | ARG128 |
E | LYS138 |
E | HOH2112 |
site_id | CC4 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE DTV E1162 |
Chain | Residue |
E | ALA15 |
E | CYS46 |
E | D1D1166 |
site_id | CC5 |
Number of Residues | 24 |
Details | BINDING SITE FOR RESIDUE T4P E1163 |
Chain | Residue |
A | ALA113 |
A | ASN114 |
A | ARG128 |
A | LYS138 |
A | HOH2115 |
E | TRP27 |
E | HIS28 |
E | ALA59 |
E | ILE60 |
E | GLU61 |
E | VAL81 |
E | VAL82 |
E | ILE83 |
E | GLY85 |
E | GLN86 |
E | THR87 |
E | HIS89 |
E | HOH2010 |
E | HOH2067 |
E | HOH2129 |
E | HOH2130 |
E | HOH2131 |
E | HOH2132 |
E | HOH2133 |
site_id | CC6 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE D1D E1166 |
Chain | Residue |
D | VAL42 |
D | GLY45 |
E | VAL42 |
E | GLY45 |
E | CYS46 |
E | DTV1162 |
site_id | CC7 |
Number of Residues | 2 |
Details | BINDING SITE FOR RESIDUE ACY A1161 |
Chain | Residue |
A | VAL56 |
A | LEU57 |
site_id | CC8 |
Number of Residues | 1 |
Details | BINDING SITE FOR RESIDUE ACY B1161 |
Chain | Residue |
B | HOH2129 |
site_id | CC9 |
Number of Residues | 1 |
Details | BINDING SITE FOR RESIDUE ACY D1161 |
Chain | Residue |
D | ARG55 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 5 |
Details | ACT_SITE: Proton donor => ECO:0000255 |
Chain | Residue | Details |
A | HIS89 | |
B | HIS89 | |
C | HIS89 | |
D | HIS89 | |
E | HIS89 |
site_id | SWS_FT_FI2 |
Number of Residues | 20 |
Details | BINDING: |
Chain | Residue | Details |
A | TRP27 | |
C | ALA59 | |
C | VAL81 | |
C | ASN114 | |
D | TRP27 | |
D | ALA59 | |
D | VAL81 | |
D | ASN114 | |
E | TRP27 | |
E | ALA59 | |
E | VAL81 | |
A | ALA59 | |
E | ASN114 | |
A | VAL81 | |
A | ASN114 | |
B | TRP27 | |
B | ALA59 | |
B | VAL81 | |
B | ASN114 | |
C | TRP27 |
site_id | SWS_FT_FI3 |
Number of Residues | 10 |
Details | BINDING: BINDING => ECO:0000305 |
Chain | Residue | Details |
A | GLN86 | |
E | ARG128 | |
A | ARG128 | |
B | GLN86 | |
B | ARG128 | |
C | GLN86 | |
C | ARG128 | |
D | GLN86 | |
D | ARG128 | |
E | GLN86 |
Catalytic Information from CSA
site_id | CSA1 |
Number of Residues | 1 |
Details | Annotated By Reference To The Literature 1rvv |
Chain | Residue | Details |
A | HIS89 |
site_id | CSA2 |
Number of Residues | 1 |
Details | Annotated By Reference To The Literature 1rvv |
Chain | Residue | Details |
B | HIS89 |
site_id | CSA3 |
Number of Residues | 1 |
Details | Annotated By Reference To The Literature 1rvv |
Chain | Residue | Details |
C | HIS89 |
site_id | CSA4 |
Number of Residues | 1 |
Details | Annotated By Reference To The Literature 1rvv |
Chain | Residue | Details |
D | HIS89 |
site_id | CSA5 |
Number of Residues | 1 |
Details | Annotated By Reference To The Literature 1rvv |
Chain | Residue | Details |
E | HIS89 |