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1VYB

Endonuclease domain of human LINE1 ORF2p

Functional Information from GO Data
ChainGOidnamespacecontents
A0003824molecular_functioncatalytic activity
A0004518molecular_functionnuclease activity
A0006281biological_processDNA repair
B0003824molecular_functioncatalytic activity
B0004518molecular_functionnuclease activity
B0006281biological_processDNA repair
Functional Information from PDB Data
site_idAC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SO4 A1239
ChainResidue
AHIS7
AASN162
ALYS163
ALYS218
AARG238
AHOH2215

site_idAC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SO4 A1240
ChainResidue
AARG91
AHOH2216
BLYS85
AILE62
ATYR63
AGLN64

site_idAC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 A1241
ChainResidue
AGLY17
ALEU18
AASN19
AHIS45
AHOH2217

site_idAC4
Number of Residues7
DetailsBINDING SITE FOR RESIDUE SO3 A1242
ChainResidue
ALYS61
ATYR63
APRO86
AHOH2218
AHOH2219
BTYR63
BPRO86

site_idAC5
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 B1239
ChainResidue
ALYS68
ALYS93
BALA21
BARG24
BHIS25

site_idAC6
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SO4 B1240
ChainResidue
BGLY17
BLEU18
BASN19
BHIS45
BHOH2070
BHOH2220

site_idAC7
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SO4 B1241
ChainResidue
AGLN159
BHIS7
BLYS218
BARG238
BHOH2221
BHOH2222

site_idAC8
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SO4 B1242
ChainResidue
AGLN159
ALYS218
BLYS218
BARG219
BHOH2223
BHOH2224

site_idAC9
Number of Residues8
DetailsBINDING SITE FOR RESIDUE SO3 B1243
ChainResidue
BLYS71
BALA72
BHIS96
BTYR115
BHOH2107
BHOH2225
BHOH2226
BHOH2227

site_idBC1
Number of Residues10
DetailsBINDING SITE FOR RESIDUE GOL A1243
ChainResidue
ATHR224
AASN225
ASER228
AHIS230
ASER231
AHOH2210
AHOH2220
AHOH2221
BTYR191
BTYR201

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsACT_SITE: ACT_SITE => ECO:0000250|UniProtKB:P27695
ChainResidueDetails
ATYR115
BTYR115

site_idSWS_FT_FI2
Number of Residues2
DetailsACT_SITE: Proton donor/acceptor => ECO:0000250|UniProtKB:P27695
ChainResidueDetails
AASP145
BASP145

site_idSWS_FT_FI3
Number of Residues2
DetailsBINDING: BINDING => ECO:0000269|PubMed:17626046, ECO:0000269|PubMed:34554261, ECO:0007744|PDB:2V0S, ECO:0007744|PDB:7N8K
ChainResidueDetails
AGLU43
BGLU43

Catalytic Information from CSA
site_idCSA1
Number of Residues5
DetailsAnnotated By Reference To The Literature 1ako
ChainResidueDetails
AASP145
AASN14
AASN147
AASP205
AHIS230

site_idCSA2
Number of Residues5
DetailsAnnotated By Reference To The Literature 1ako
ChainResidueDetails
BASP145
BASN14
BASN147
BASP205
BHIS230

237992

PDB entries from 2025-06-25

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