Summary Structural details Experimental details Functional details Sequence Neighbor History Downloads

1VYA

Identification and characterization of the first plant G-quadruplex binding protein encoded by the Zea mays L. nucleoside diphosphate1 gene, ZmNDPK1

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0003677	molecular_function	DNA binding
A	0004550	molecular_function	nucleoside diphosphate kinase activity
A	0005524	molecular_function	ATP binding
A	0005634	cellular_component	nucleus
A	0006183	biological_process	GTP biosynthetic process
A	0006228	biological_process	UTP biosynthetic process
A	0006241	biological_process	CTP biosynthetic process
A	0009142	biological_process	nucleoside triphosphate biosynthetic process
A	0016301	molecular_function	kinase activity
A	0016310	biological_process	phosphorylation
A	0034214	biological_process	protein hexamerization
B	0003677	molecular_function	DNA binding
B	0004550	molecular_function	nucleoside diphosphate kinase activity
B	0005524	molecular_function	ATP binding
B	0005634	cellular_component	nucleus
B	0006183	biological_process	GTP biosynthetic process
B	0006228	biological_process	UTP biosynthetic process
B	0006241	biological_process	CTP biosynthetic process
B	0009142	biological_process	nucleoside triphosphate biosynthetic process
B	0016301	molecular_function	kinase activity
B	0016310	biological_process	phosphorylation
B	0034214	biological_process	protein hexamerization
C	0003677	molecular_function	DNA binding
C	0004550	molecular_function	nucleoside diphosphate kinase activity
C	0005524	molecular_function	ATP binding
C	0005634	cellular_component	nucleus
C	0006183	biological_process	GTP biosynthetic process
C	0006228	biological_process	UTP biosynthetic process
C	0006241	biological_process	CTP biosynthetic process
C	0009142	biological_process	nucleoside triphosphate biosynthetic process
C	0016301	molecular_function	kinase activity
C	0016310	biological_process	phosphorylation
C	0034214	biological_process	protein hexamerization
D	0003677	molecular_function	DNA binding
D	0004550	molecular_function	nucleoside diphosphate kinase activity
D	0005524	molecular_function	ATP binding
D	0005634	cellular_component	nucleus
D	0006183	biological_process	GTP biosynthetic process
D	0006228	biological_process	UTP biosynthetic process
D	0006241	biological_process	CTP biosynthetic process
D	0009142	biological_process	nucleoside triphosphate biosynthetic process
D	0016301	molecular_function	kinase activity
D	0016310	biological_process	phosphorylation
D	0034214	biological_process	protein hexamerization
E	0003677	molecular_function	DNA binding
E	0004550	molecular_function	nucleoside diphosphate kinase activity
E	0005524	molecular_function	ATP binding
E	0005634	cellular_component	nucleus
E	0006183	biological_process	GTP biosynthetic process
E	0006228	biological_process	UTP biosynthetic process
E	0006241	biological_process	CTP biosynthetic process
E	0009142	biological_process	nucleoside triphosphate biosynthetic process
E	0016301	molecular_function	kinase activity
E	0016310	biological_process	phosphorylation
E	0034214	biological_process	protein hexamerization
F	0003677	molecular_function	DNA binding
F	0004550	molecular_function	nucleoside diphosphate kinase activity
F	0005524	molecular_function	ATP binding
F	0005634	cellular_component	nucleus
F	0006183	biological_process	GTP biosynthetic process
F	0006228	biological_process	UTP biosynthetic process
F	0006241	biological_process	CTP biosynthetic process
F	0009142	biological_process	nucleoside triphosphate biosynthetic process
F	0016301	molecular_function	kinase activity
F	0016310	biological_process	phosphorylation
F	0034214	biological_process	protein hexamerization
G	0003677	molecular_function	DNA binding
G	0004550	molecular_function	nucleoside diphosphate kinase activity
G	0005524	molecular_function	ATP binding
G	0005634	cellular_component	nucleus
G	0006183	biological_process	GTP biosynthetic process
G	0006228	biological_process	UTP biosynthetic process
G	0006241	biological_process	CTP biosynthetic process
G	0009142	biological_process	nucleoside triphosphate biosynthetic process
G	0016301	molecular_function	kinase activity
G	0016310	biological_process	phosphorylation
G	0034214	biological_process	protein hexamerization
H	0003677	molecular_function	DNA binding
H	0004550	molecular_function	nucleoside diphosphate kinase activity
H	0005524	molecular_function	ATP binding
H	0005634	cellular_component	nucleus
H	0006183	biological_process	GTP biosynthetic process
H	0006228	biological_process	UTP biosynthetic process
H	0006241	biological_process	CTP biosynthetic process
H	0009142	biological_process	nucleoside triphosphate biosynthetic process
H	0016301	molecular_function	kinase activity
H	0016310	biological_process	phosphorylation
H	0034214	biological_process	protein hexamerization
I	0003677	molecular_function	DNA binding
I	0004550	molecular_function	nucleoside diphosphate kinase activity
I	0005524	molecular_function	ATP binding
I	0005634	cellular_component	nucleus
I	0006183	biological_process	GTP biosynthetic process
I	0006228	biological_process	UTP biosynthetic process
I	0006241	biological_process	CTP biosynthetic process
I	0009142	biological_process	nucleoside triphosphate biosynthetic process
I	0016301	molecular_function	kinase activity
I	0016310	biological_process	phosphorylation
I	0034214	biological_process	protein hexamerization
J	0003677	molecular_function	DNA binding
J	0004550	molecular_function	nucleoside diphosphate kinase activity
J	0005524	molecular_function	ATP binding
J	0005634	cellular_component	nucleus
J	0006183	biological_process	GTP biosynthetic process
J	0006228	biological_process	UTP biosynthetic process
J	0006241	biological_process	CTP biosynthetic process
J	0009142	biological_process	nucleoside triphosphate biosynthetic process
J	0016301	molecular_function	kinase activity
J	0016310	biological_process	phosphorylation
J	0034214	biological_process	protein hexamerization
K	0003677	molecular_function	DNA binding
K	0004550	molecular_function	nucleoside diphosphate kinase activity
K	0005524	molecular_function	ATP binding
K	0005634	cellular_component	nucleus
K	0006183	biological_process	GTP biosynthetic process
K	0006228	biological_process	UTP biosynthetic process
K	0006241	biological_process	CTP biosynthetic process
K	0009142	biological_process	nucleoside triphosphate biosynthetic process
K	0016301	molecular_function	kinase activity
K	0016310	biological_process	phosphorylation
K	0034214	biological_process	protein hexamerization
L	0003677	molecular_function	DNA binding
L	0004550	molecular_function	nucleoside diphosphate kinase activity
L	0005524	molecular_function	ATP binding
L	0005634	cellular_component	nucleus
L	0006183	biological_process	GTP biosynthetic process
L	0006228	biological_process	UTP biosynthetic process
L	0006241	biological_process	CTP biosynthetic process
L	0009142	biological_process	nucleoside triphosphate biosynthetic process
L	0016301	molecular_function	kinase activity
L	0016310	biological_process	phosphorylation
L	0034214	biological_process	protein hexamerization

Functional Information from PROSITE/UniProt

site_id	PS00469
Number of Residues	9
Details	NDPK Nucleoside diphosphate kinase (NDPK) active site signature. NviHGSDSI

Chain	Residue	Details
A	ASN112-ILE120

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	12
Details	ACT_SITE: Pros-phosphohistidine intermediate => ECO:0000255\|PROSITE-ProRule:PRU10030, ECO:0000269\|PubMed:25679041

Chain	Residue	Details
A	HIS115
J	HIS115
K	HIS115
L	HIS115
B	HIS115
C	HIS115
D	HIS115
E	HIS115
F	HIS115
G	HIS115
H	HIS115
I	HIS115

site_id	SWS_FT_FI2
Number of Residues	72
Details	BINDING: BINDING => ECO:0000250\|UniProtKB:P22392

Chain	Residue	Details
A	LYS9
B	THR91
B	ARG102
B	ASN112
C	LYS9
C	PHE57
C	ARG85
C	THR91
C	ARG102
C	ASN112
D	LYS9
A	PHE57
D	PHE57
D	ARG85
D	THR91
D	ARG102
D	ASN112
E	LYS9
E	PHE57
E	ARG85
E	THR91
E	ARG102
A	ARG85
E	ASN112
F	LYS9
F	PHE57
F	ARG85
F	THR91
F	ARG102
F	ASN112
G	LYS9
G	PHE57
G	ARG85
A	THR91
G	THR91
G	ARG102
G	ASN112
H	LYS9
H	PHE57
H	ARG85
H	THR91
H	ARG102
H	ASN112
I	LYS9
A	ARG102
I	PHE57
I	ARG85
I	THR91
I	ARG102
I	ASN112
J	LYS9
J	PHE57
J	ARG85
J	THR91
J	ARG102
A	ASN112
J	ASN112
K	LYS9
K	PHE57
K	ARG85
K	THR91
K	ARG102
K	ASN112
L	LYS9
L	PHE57
L	ARG85
B	LYS9
L	THR91
L	ARG102
L	ASN112
B	PHE57
B	ARG85

		Sequence (fasta)
		PDBx/mmCIF
		PDBML format (no-atom)
		PDB format (full)
		Validation report (PDF)
		EDMap 2fo-fc (MTZ)