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1VRQ

Crystal Structure of Heterotetrameric Sarcosine Oxidase from Corynebacterium sp. U-96 in complex with Folinic Acid

Functional Information from GO Data
ChainGOidnamespacecontents
A0000166molecular_functionnucleotide binding
A0005737cellular_componentcytoplasm
A0005829cellular_componentcytosol
A0008115molecular_functionsarcosine oxidase activity
A0016491molecular_functionoxidoreductase activity
A0046653biological_processtetrahydrofolate metabolic process
B0000166molecular_functionnucleotide binding
B0005737cellular_componentcytoplasm
B0008115molecular_functionsarcosine oxidase activity
B0016491molecular_functionoxidoreductase activity
B0046653biological_processtetrahydrofolate metabolic process
C0005737cellular_componentcytoplasm
C0008115molecular_functionsarcosine oxidase activity
C0016491molecular_functionoxidoreductase activity
C1901053biological_processsarcosine catabolic process
D0005737cellular_componentcytoplasm
D0008115molecular_functionsarcosine oxidase activity
D0016491molecular_functionoxidoreductase activity
D0046653biological_processtetrahydrofolate metabolic process
D0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN D 1006
ChainResidue
DCYS6
DCYS9
DHIS59
DCYS63

site_idAC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 C 2001
ChainResidue
AGLN30
CALA25
CGLY26
CGLU27
CARG28

site_idAC3
Number of Residues8
DetailsBINDING SITE FOR RESIDUE SO4 A 2002
ChainResidue
AARG574
AALA696
AALA697
ATHR722
AHOH3682
AHOH4041
AHOH4141
CARG176

site_idAC4
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 A 2003
ChainResidue
ALYS446
AILE447
AHOH3533

site_idAC5
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 B 2004
ChainResidue
BASN13
BASN14
BHOH3320

site_idAC6
Number of Residues8
DetailsBINDING SITE FOR RESIDUE SO4 D 2005
ChainResidue
ATHR709
DHIS24
DASN68
DALA84
DGLY85
DHOH3297
DHOH3794
DHOH4008

site_idAC7
Number of Residues8
DetailsBINDING SITE FOR RESIDUE SO4 B 2006
ChainResidue
BHIS7
BLYS171
BHIS174
BLYS277
BHOH3358
BHOH3710
BHOH3942
BHOH4011

site_idAC8
Number of Residues7
DetailsBINDING SITE FOR RESIDUE SO4 A 2007
ChainResidue
AASN651
AGLY652
ASER847
ALEU849
AHOH3539
AHOH3781
AHOH3807

site_idAC9
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 A 2008
ChainResidue
AARG929
AASN930

site_idBC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 A 2009
ChainResidue
AGLN217
AARG219
AHOH3107
CVAL199

site_idBC2
Number of Residues7
DetailsBINDING SITE FOR RESIDUE SO4 A 2010
ChainResidue
ASER1
ALYS285
ALEU349
ASER350
AALA371
AASP372
AHOH4103

site_idBC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 A 2011
ChainResidue
AGLN489
AASP493
ATYR511
ATHR512
BHIS7

site_idBC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 D 2012
ChainResidue
CARG119
CTHR153
DSER60
DGLY62
DHOH3782

site_idBC5
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 A 2013
ChainResidue
ASER7
AALA8

site_idBC6
Number of Residues36
DetailsBINDING SITE FOR RESIDUE FAD B 1001
ChainResidue
BGLY356
BPHE357
BLYS358
BDMG1005
BHOH3007
BHOH3159
BHOH3577
BHOH3698
BVAL26
BGLY27
BGLY29
BGLY30
BHIS31
BLEU51
BGLU52
BLYS53
BGLY59
BASN60
BMET61
BARG63
BASN64
BTHR65
BTHR66
BILE67
BCYS194
BVAL196
BALA224
BGLY225
BALA226
BHIS228
BLEU232
BLEU247
BALA249
BGLY353
BTHR354
BGLY355

site_idBC7
Number of Residues29
DetailsBINDING SITE FOR RESIDUE NAD A 1002
ChainResidue
AGLY134
AGLY136
APRO137
AALA138
AASP157
AGLU158
AARG159
AGLY164
ATHR165
ATHR202
AVAL204
AALA247
ATHR248
AALA249
ASER294
APHE380
AGLY416
AALA417
ALEU422
AASP423
ATHR424
ATYR553
AHOH3003
AHOH3005
AHOH3019
AHOH3039
AHOH3191
AHOH3212
AHOH3540

site_idBC8
Number of Residues13
DetailsBINDING SITE FOR RESIDUE FON A 1003
ChainResidue
ALEU631
ATYR663
AASP676
AGLY677
AHIS690
ATHR691
AILE774
ASER775
APHE776
AGLU783
ALYS822
APHE824
ATRP844

site_idBC9
Number of Residues22
DetailsBINDING SITE FOR RESIDUE FMN B 1004
ChainResidue
ALYS509
AARG510
ATHR516
AGLN520
ATHR548
AARG550
BALA62
BARG63
BASN64
BTHR66
BHIS172
BVAL251
BLYS277
BGLU279
BARG322
BTRP324
BHOH3042
BHOH3059
BHOH3084
BHOH3295
BHOH3449
BHOH3520

site_idCC1
Number of Residues9
DetailsBINDING SITE FOR RESIDUE DMG B 1005
ChainResidue
BTHR65
BILE67
BARG69
BMET264
BTHR354
BLYS358
BALA401
BFAD1001
BHOH3224

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsBINDING: BINDING => ECO:0000269|PubMed:15946648, ECO:0000269|PubMed:20675294, ECO:0007744|PDB:1VRQ, ECO:0007744|PDB:1X31, ECO:0007744|PDB:3AD7, ECO:0007744|PDB:3AD8, ECO:0007744|PDB:3AD9, ECO:0007744|PDB:3ADA
ChainResidueDetails
DCYS6
BGLY356
BLYS358
DCYS9
DHIS59
DCYS63
BMET61
BTHR65
BILE67
BVAL196
BGLY353

site_idSWS_FT_FI2
Number of Residues1
DetailsMOD_RES: Tele-8alpha-FMN histidine => ECO:0000269|PubMed:11902668, ECO:0000269|PubMed:20675294, ECO:0007744|PDB:3AD7, ECO:0007744|PDB:3AD8, ECO:0007744|PDB:3AD9, ECO:0007744|PDB:3ADA
ChainResidueDetails
BHIS172
AGLU783

Catalytic Information from CSA
site_idCSA1
Number of Residues1
DetailsAnnotated By Reference To The Literature 1c0k
ChainResidueDetails
BLEU385

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PDB entries from 2024-05-01

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