1VKP
X-RAY STRUCTURE OF GENE PRODUCT FROM ARABIDOPSIS THALIANA AT5G08170, AGMATINE IMINOHYDROLASE
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0004668 | molecular_function | protein-arginine deiminase activity |
| A | 0005783 | cellular_component | endoplasmic reticulum |
| A | 0006596 | biological_process | polyamine biosynthetic process |
| A | 0009446 | biological_process | putrescine biosynthetic process |
| A | 0016787 | molecular_function | hydrolase activity |
| A | 0033388 | biological_process | putrescine biosynthetic process from arginine |
| A | 0047632 | molecular_function | agmatine deiminase activity |
| B | 0004668 | molecular_function | protein-arginine deiminase activity |
| B | 0005783 | cellular_component | endoplasmic reticulum |
| B | 0006596 | biological_process | polyamine biosynthetic process |
| B | 0009446 | biological_process | putrescine biosynthetic process |
| B | 0016787 | molecular_function | hydrolase activity |
| B | 0033388 | biological_process | putrescine biosynthetic process from arginine |
| B | 0047632 | molecular_function | agmatine deiminase activity |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE MG A 802 |
| Chain | Residue |
| A | ASP119 |
| A | TRP120 |
| A | SER143 |
| A | HOH1040 |
| A | HOH1056 |
| A | HOH1181 |
| site_id | AC2 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE MG B 801 |
| Chain | Residue |
| B | HOH929 |
| B | HOH944 |
| B | HOH986 |
| B | ASP119 |
| B | TRP120 |
| B | SER143 |
| site_id | AC3 |
| Number of Residues | 7 |
| Details | BINDING SITE FOR RESIDUE EDO A 901 |
| Chain | Residue |
| A | ASN35 |
| A | TRP91 |
| A | THR221 |
| A | ARG301 |
| A | ALA360 |
| A | EDO903 |
| A | HOH1228 |
| site_id | AC4 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE EDO A 902 |
| Chain | Residue |
| A | ARG337 |
| A | VAL338 |
| A | HOH1079 |
| site_id | AC5 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE EDO A 903 |
| Chain | Residue |
| A | TRP91 |
| A | ASP94 |
| A | TRP125 |
| A | GLY361 |
| A | CYS366 |
| A | EDO901 |
| site_id | AC6 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE EDO A 906 |
| Chain | Residue |
| A | ASN123 |
| A | LYS184 |
| A | ASN185 |
| A | ARG186 |
| A | PRO188 |
| site_id | AC7 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE EDO A 907 |
| Chain | Residue |
| A | TYR216 |
| A | GLY217 |
| A | ASP218 |
| A | GLU219 |
| A | ARG252 |
| A | HOH1066 |
| site_id | AC8 |
| Number of Residues | 8 |
| Details | BINDING SITE FOR RESIDUE EDO A 908 |
| Chain | Residue |
| A | VAL83 |
| A | GLU84 |
| A | LEU149 |
| A | HOH1038 |
| A | HOH1100 |
| B | VAL83 |
| B | GLU84 |
| B | LEU149 |
| site_id | AC9 |
| Number of Residues | 2 |
| Details | BINDING SITE FOR RESIDUE EDO A 910 |
| Chain | Residue |
| A | ASP244 |
| A | THR246 |
| site_id | BC1 |
| Number of Residues | 7 |
| Details | BINDING SITE FOR RESIDUE MPO A 1000 |
| Chain | Residue |
| A | TYR14 |
| A | GLY170 |
| A | GLU171 |
| A | GLY172 |
| A | GLY204 |
| A | GLN206 |
| A | HOH1229 |
| site_id | BC2 |
| Number of Residues | 7 |
| Details | BINDING SITE FOR RESIDUE EDO B 904 |
| Chain | Residue |
| B | TRP91 |
| B | ASP94 |
| B | THR221 |
| B | GLY361 |
| B | GLY362 |
| B | CYS366 |
| B | HOH981 |
| site_id | BC3 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE EDO B 905 |
| Chain | Residue |
| B | TRP19 |
| B | ALA232 |
| B | ARG233 |
| B | HIS346 |
| B | HOH1274 |
| site_id | BC4 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE EDO B 909 |
| Chain | Residue |
| B | SER55 |
| B | PHE57 |
| B | GLU58 |
| B | PRO59 |
| B | HOH1145 |
| site_id | BC5 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE EDO B 911 |
| Chain | Residue |
| B | TRP125 |
| B | ASP130 |
| B | ASN185 |
| B | GLU219 |
| B | ASP220 |
| B | ASN222 |
| site_id | BC6 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE EDO B 912 |
| Chain | Residue |
| B | SER7 |
| B | ARG154 |
| B | PHE155 |
| B | GLN156 |
| B | HOH963 |
| site_id | BC7 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE EDO B 913 |
| Chain | Residue |
| B | TYR14 |
| B | PRO16 |
| B | ASP20 |
| B | ALA373 |
| B | HOH970 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 2 |
| Details | ACT_SITE: Amidino-cysteine intermediate => ECO:0000250|UniProtKB:Q837U5 |
| Chain | Residue | Details |
| A | CYS366 | |
| B | CYS366 |
| site_id | SWS_FT_FI2 |
| Number of Residues | 4 |
| Details | BINDING: BINDING => ECO:0000250|UniProtKB:G7JT50 |
| Chain | Residue | Details |
| A | ASP220 | |
| A | ASP226 | |
| B | ASP220 | |
| B | ASP226 |
