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1VEV

Crystal structure of peptide deformylase from Leptospira Interrogans (LiPDF) at pH6.5

Functional Information from GO Data
ChainGOidnamespacecontents
A0006412biological_processtranslation
A0016787molecular_functionhydrolase activity
A0042586molecular_functionpeptide deformylase activity
A0043686biological_processco-translational protein modification
A0046872molecular_functionmetal ion binding
B0006412biological_processtranslation
B0016787molecular_functionhydrolase activity
B0042586molecular_functionpeptide deformylase activity
B0043686biological_processco-translational protein modification
B0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE ZN A 1513
ChainResidue
AGLN53
ACYS101
AHIS143
AHIS147
AFMT1800

site_idAC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE ZN B 2513
ChainResidue
BFMT2800
BGLN53
BCYS101
BHIS143
BHIS147

site_idAC3
Number of Residues15
DetailsBINDING SITE FOR RESIDUE MES A 1716
ChainResidue
AGLY46
AVAL47
AGLY48
AARG70
ATYR71
APHE97
AGLY100
ACYS101
ALEU102
ATYR136
AILE139
AVAL140
AHIS143
AFMT1800
AHOH3805

site_idAC4
Number of Residues13
DetailsBINDING SITE FOR RESIDUE MES B 2716
ChainResidue
BGLY46
BVAL47
BARG70
BTYR71
BPHE97
BGLU99
BGLY100
BCYS101
BLEU102
BTYR136
BILE139
BHIS143
BFMT2800

site_idAC5
Number of Residues10
DetailsBINDING SITE FOR RESIDUE MES A 3716
ChainResidue
APRO78
AARG80
ALYS137
AHOH3778
AHOH3782
AHOH3790
AHOH3798
BPHE38
BARG42
BGLU79

site_idAC6
Number of Residues7
DetailsBINDING SITE FOR RESIDUE FMT A 1800
ChainResidue
AGLY48
ALEU49
AGLN53
ALEU102
AGLU144
AZN1513
AMES1716

site_idAC7
Number of Residues8
DetailsBINDING SITE FOR RESIDUE FMT B 2800
ChainResidue
BGLY48
BGLN53
BLEU102
BHIS143
BGLU144
BHIS147
BZN2513
BMES2716

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsACT_SITE: ACT_SITE => ECO:0000250
ChainResidueDetails
AGLU144
BGLU144

site_idSWS_FT_FI2
Number of Residues6
DetailsBINDING: BINDING => ECO:0000250
ChainResidueDetails
ACYS101
AHIS143
AHIS147
BCYS101
BHIS143
BHIS147

Catalytic Information from CSA
site_idCSA1
Number of Residues4
DetailsAnnotated By Reference To The Literature 1bs4
ChainResidueDetails
ALEU102
AGLY48
AGLN53
AGLU144

site_idCSA2
Number of Residues4
DetailsAnnotated By Reference To The Literature 1bs4
ChainResidueDetails
BLEU102
BGLY48
BGLN53
BGLU144

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PDB entries from 2024-09-04

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